Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Elaeophora_20elaphi_20[genbank_20GCA_5F000951195.1_202014-07-18] 8,078 sequences; 82,568,297 total letters Query= NC_033775.1 Length=376207 Score E Sequences producing significant alignments: (Bits) Value seq271 104 6e-17 seq100 100 7e-16 seq1199 95.1 3e-14 >seq271 Length=49288 Score = 104 bits (114), Expect = 6e-17 Identities = 105/137 (77%), Gaps = 0/137 (0%) Strand=Plus/Plus Query 177924 CAAATTTTCGTGAAAACTCTCACAGGAAAAACGATCACCCTCGAGGTGGAAAGCTCAGAC 177983 || ||||| || || || || || || ||||| || || || ||||||||| || || Sbjct 36929 CAGATTTTTGTTAAGACACTTACTGGCAAAACTATAACACTGGAGGTGGAAGCGTCGGAT 36988 Query 177984 ACCATCGAGAACGTCAAACAAAAGATTCAGGACAAAGAAGGAATCCCTCCGGACCAGCAA 178043 || |||||||| || || ||||| ||||| ||||| || ||||| || ||||||||| Sbjct 36989 ACGATCGAGAATGTGAAGGCTAAGATCCAGGATAAAGAGGGTATCCCACCTGACCAGCAA 37048 Query 178044 CGACTTATCTTCGCCGG 178060 |||||||| ||||| || Sbjct 37049 CGACTTATTTTCGCGGG 37065 Score = 100 bits (110), Expect = 7e-16 Identities = 108/143 (76%), Gaps = 0/143 (0%) Strand=Plus/Plus Query 177924 CAAATTTTCGTGAAAACTCTCACAGGAAAAACGATCACCCTCGAGGTGGAAAGCTCAGAC 177983 |||||||| ||||| || | ||||| || |||||||| || || || || || ||| Sbjct 36598 CAAATTTTTGTGAAGACGTTAACAGGCAAGACGATCACTCTAGAAGTTGAGGCTTCTGAC 36657 Query 177984 ACCATCGAGAACGTCAAACAAAAGATTCAGGACAAAGAAGGAATCCCTCCGGACCAGCAA 178043 || || || || || || ||||||||||||||||||||||| || || || ||||| Sbjct 36658 ACGATTGAAAATGTAAAGGCCAAGATTCAGGACAAAGAAGGAATTCCACCAGATCAGCAG 36717 Query 178044 CGACTTATCTTCGCCGGAAAACA 178066 || ||||| || ||||| || || Sbjct 36718 CGTCTTATTTTTGCCGGTAAGCA 36740 Score = 95.1 bits (104), Expect = 3e-14 Identities = 103/137 (75%), Gaps = 0/137 (0%) Strand=Plus/Plus Query 177924 CAAATTTTCGTGAAAACTCTCACAGGAAAAACGATCACCCTCGAGGTGGAAAGCTCAGAC 177983 |||||||| || |||||||| || || ||||| || || | || ||||| || || Sbjct 36188 CAAATTTTTGTAAAAACTCTTACTGGTAAAACAATTACATTGGAAGTGGAGGCATCTGAT 36247 Query 177984 ACCATCGAGAACGTCAAACAAAAGATTCAGGACAAAGAAGGAATCCCTCCGGACCAGCAA 178043 ||||||||||| || || || || ||||| || |||||||| || || || ||||| Sbjct 36248 ACCATCGAGAATGTTAAGGCCAAAATCCAGGATAAGGAAGGAATTCCACCAGATCAGCAG 36307 Query 178044 CGACTTATCTTCGCCGG 178060 ||||| ||||| ||||| Sbjct 36308 CGACTAATCTTTGCCGG 36324 >seq100 Length=72284 Score = 100 bits (110), Expect = 7e-16 Identities = 112/149 (75%), Gaps = 3/149 (2%) Strand=Plus/Plus Query 177915 AAAATGCTCCAAATTTTCGTGAAAACTCTCACAGGAAAAACGATCACCCTCGAGGTGGAA 177974 ||||||| | || |||||||| || | || |||||||| |||||||| ||||||||| Sbjct 23557 AAAATGC---AGATATTCGTGAAGACATTAACTGGAAAAACAATCACCCTTGAGGTGGAA 23613 Query 177975 AGCTCAGACACCATCGAGAACGTCAAACAAAAGATTCAGGACAAAGAAGGAATCCCTCCG 178034 || || || || ||||| || || || |||||||| ||||| || || || || Sbjct 23614 TCGTCTGATACTATTGAGAATGTAAAGGCTAAAATTCAGGATAAAGAGGGCATTCCGCCT 23673 Query 178035 GACCAGCAACGACTTATCTTCGCCGGAAA 178063 || || ||||||||||| ||||| || || Sbjct 23674 GATCAACAACGACTTATTTTCGCAGGTAA 23702 >seq1199 Length=19938 Score = 95.1 bits (104), Expect = 3e-14 Identities = 103/137 (75%), Gaps = 0/137 (0%) Strand=Plus/Minus Query 177924 CAAATTTTCGTGAAAACTCTCACAGGAAAAACGATCACCCTCGAGGTGGAAAGCTCAGAC 177983 ||||| || || ||||| | || || || ||||| || || ||||| ||| ||| || Sbjct 15307 CAAATATTTGTTAAAACATTGACTGGTAAGACGATTACGCTTGAGGTCGAATCCTCGGAT 15248 Query 177984 ACCATCGAGAACGTCAAACAAAAGATTCAGGACAAAGAAGGAATCCCTCCGGACCAGCAA 178043 || || ||||| || ||| |||||||||||||||||| || || ||||| || ||||| Sbjct 15247 ACGATTGAGAATGTGAAAGCAAAGATTCAGGACAAAGAGGGCATACCTCCAGATCAGCAG 15188 Query 178044 CGACTTATCTTCGCCGG 178060 || | || ||||| || Sbjct 15187 CGTTTGATTTTCGCAGG 15171 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1203606614573132