Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Enterobius_20vermicularis_20[genbank_20GCA_5F000951215.1_202014-09- 25] 19,832 sequences; 150,050,672 total letters Query= NC_003278.1 Length=35580 Score E Sequences producing significant alignments: (Bits) Value seq15822 197 3e-46 seq8026 107 4e-19 >seq15822 Length=778 Score = 197 bits (218), Expect = 3e-46 Identities = 494/743 (66%), Gaps = 18/743 (2%) Strand=Plus/Minus Query 3277 AGGGCGTCATGACTTACGTCGATCTTGATGCGATCGGCGGCC--GGCTTG-CCCTTGTTG 3333 ||||||| |||||| |||||||| | | ||| |||||||| ||| | ||| ||| Sbjct 772 AGGGCGTTATGACTGACGTCGATTTCCACGCGTTCGGCGGCGCTGGCGCGTCCCCGGTTA 713 Query 3334 AAGCGCTCGCCAGTCCAGAATGTGTAGGCCTCATGCGCCATCGAACTGGGCGTCGAGAAG 3393 || | || || | |||||| | |||||| || ||||||| || || || ||||| Sbjct 712 AACAGTTCACCCGACCAGAACGGGTAGGCGTCGTGCGCCAGCGTGGACGGGGTGGAGAAA 653 Query 3394 TAGGTCCGGCGGTAGCGCTTCTGCATCGCCATACCGCTGGCGACCTTGTTCAGCTCCTTG 3453 |||||| ||| | | |||| |||||||| || ||||| ||| ||| Sbjct 652 TAGGTCGAGCGCAGGTGACTCTGTGAGGCCATACCTGATGCCACCTTACGCAGTACCTGA 593 Query 3454 AACTTGAACGTCCAGAAGAACTCGTCGAAGTAGAAGTTGCCGTGGTAGCCCTGGGCAGTC 3513 || || ||||||| | |||||||| ||| | || ||||| | || ||| || || Sbjct 592 AAATTCGGGATCCAGAAAATCTCGTCGACGTACAGGTCGCCGTTATGGCTCTGCGCGGTG 533 Query 3514 CGCGCGTTGGTGCCGAGGAAGTGCAATTCCGCGCCGTTCGG---CAGGATGATCGGGTCG 3570 | |||||||||||| || || || |||||||| ||||| |||||||| Sbjct 532 TTGGAGTTGGTGCCGAGAAAAATCAGTTTTGCGCCGTTATTGCCCAGGACAATCGGGTCA 473 Query 3571 CCCTTCAGTTCGACACCTACCGCATCGCGCGCGAAGGCCTGGATATACGCCTTGAAGATG 3630 || | || || || | ||| || | || ||||| ||| || | ||| | Sbjct 472 CCGGTAAGGTCAACGTCAACCAGATGG---GCAAAGGCGATGATGTATTCGCGGAACACA 416 Query 3631 TGCGCTTGGGCCTTGCTGGCCGACAGGAATATCTGGTTGCGCCCCGTTTCCAGCGCGTCG 3690 | ||| || | || ||||||||||| || |||||||| | || |||| ||| ||| Sbjct 415 TACGCCTGCGTTTTACTGGCCGACAGAAAAATCTGGTTATGACCGGTTTTCAGGGCGCGC 356 Query 3691 ATCAGCGCCTCGCGGGCGAAGTAGAACGTGGCGCCGATCTGCCGCGACTTGAGAATCACG 3750 | |||||||||||||| || || ||||| ||||| ||||| || || || || || || Sbjct 355 AGCAGCGCCTCGCGGGAAAAATAAAACGTTGCGCCAATCTGGCGGGATTTCAGGATATCG 296 Query 3751 CGGGTTCGCTGATTA---CCCGCGCGGTACCAGTCTTTCTGGTAGTCGAAGCAACCGTCG 3807 ||| | || || | | || ||||| ||||||| ||| |||||||| | || Sbjct 295 CGGATGCGGTGCTCAAGCCCGGCGCGATACCAGTGCAACTGATAGTCGAAAGACTGCTCA 236 Query 3808 AGGAAGGCCTCGACCAGTTTCTCGGTCAGTTCCTCACTGATGTCGTTGCGCTTCGGCTTG 3867 | ||| || |||| || ||| | || ||||||| || ||||| ||| Sbjct 235 AAGAAAATCTGCTCCAGCTTTTCGATGGCCTCGTCACTGAAAAAATTCTTTTTCGGTTTG 176 Query 3868 CGCTTGGGACCTTCGTTACGCTTGGCAAGCTCGGGGTTCAGGTCGGTTTCCGTACCACCG 3927 ||| |||| ||| || || || | | || || ||||| | | ||| ||| Sbjct 175 CGCCGCCCGCCTTTGTTGCGGTTAGCGACGTTCGGATTAAGGTCTGCCT-CGT--TGCCG 119 Query 3928 CCCTG---GTAGCGCTGGATCCGCGCCTGGCGCTCAAGCTGCCGATGCAGCAGGTCGATT 3984 ||| |||||| | | ||| ||| | || |||| ||| || ||||||||| ||| Sbjct 118 GTCTGGCTGTAGCGATTTACCCGTGCCAGTCGTTCAATCTGGCGTCCCAGCAGGTCAATT 59 Query 3985 TCCTTGTAGTCACCGCCGGTCTT 4007 |||||| ||||||||||||| || Sbjct 58 TCCTTGAAGTCACCGCCGGTTTT 36 >seq8026 Length=4067 Score = 107 bits (118), Expect = 4e-19 Identities = 219/324 (68%), Gaps = 6/324 (2%) Strand=Plus/Minus Query 1649 AACTCGTCCTTGGCCGCCACCTCGCTGACCGGAATCAGTTGGATCCCCTCCTTCTTCCCG 1708 || |||||||| | ||||| || |||| ||| || | || || || || ||||| Sbjct 900 AAATCGTCCTTCGTTGCCACTTCACTGAGCGGGATAATTTTAATGCCGTCAGCTTTCCCC 841 Query 1709 TTCGGCGCGTAGACGAACAGGTTGCGGAAATTGCCAGGCCCCTTCGCGGTCTTCAGCGCC 1768 | ||| || |||| |||||||| || ||| | || |||| ||||| | Sbjct 840 TGCGGGGCATAGAGAAACAGGTTTTTAAAGTTGTTGCGGCCTTTCGA---CTTCACCATG 784 Query 1769 GT---GCGCAGCGCGTCGATGTCTTCCTCATTCTGTGCGGCGTCGGTCATGTAGAGGATG 1825 | ||| ||| ||||| || | || ||| |||| ||||| | ||| | |||| Sbjct 783 TTTTCGCGAAGCATTTCGATATCGTTGCGATCCTGCACGGCATCGGTAACGTACATGATG 724 Query 1826 AAGCCGGCGTGGCTGCCGTTGTTGTAGTACTTACGCCGGAACAGCGTGGCCGACTCGTTC 1885 | ||||| || |||||| | ||| ||||| || |||||||||||||| ||||| ||| Sbjct 723 TATCCGGCATGAGCGCCGTTTTCGTAATACTTGCGGCGGAACAGCGTGGCTGACTCATTC 664 Query 1886 AGCAGGGCGCTCTGTAGGGCGCAGAACCACTCCGGCACTCCGTAGATTTCCTGATTGATG 1945 ||| ||| | ||||||| || | ||||||| ||||| | |||||||| || Sbjct 663 AGCCAGGCAGAGTTAAGGGCGCTGAGATATTCCGGCAGGCCGTACAGCTCCTGATTAATA 604 Query 1946 TCGGCCTCGCGCAGTTGGATCACG 1969 || | ||| |||| || | |||| Sbjct 603 TCCGGCTCCAGCAGGTGAAACACG 580 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 113707614980128