Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Enterobius_20vermicularis_20[genbank_20GCA_5F000951215.1_202014-09- 25] 19,832 sequences; 150,050,672 total letters Query= NC_005309.1 Length=359853 Score E Sequences producing significant alignments: (Bits) Value seq2949 118 2e-21 seq2430 116 9e-21 seq285 93.3 1e-13 >seq2949 Length=15852 Score = 118 bits (130), Expect = 2e-21 Identities = 112/143 (78%), Gaps = 0/143 (0%) Strand=Plus/Minus Query 104420 CCAGCAAAAATTAGCCTCTGTTGATCAGGAGGTATTCCTTCTTTATCCTGAATCTTTGCT 104479 || |||||||||| | ||| ||||| ||||| || ||||| || ||||||||||| ||| Sbjct 11470 CCTGCAAAAATTAAACGCTGCTGATCCGGAGGGATGCCTTCCTTGTCCTGAATCTTCGCT 11411 Query 104480 TTTACATTTTCTACGGTATCGCTAGGTTCTACCTCTAGTGTAATAGTCTTACCAGTAAGT 104539 || |||||||| | || || || || ||||||| || || || || |||||||| Sbjct 11410 TTCACATTTTCAATTGTGTCCGAAGCCTCCACCTCTAAGGTGATTGTTTTGCCAGTAAGG 11351 Query 104540 GTTTTTACAAATATCTGCATTTT 104562 ||||||||||| |||||||| || Sbjct 11350 GTTTTTACAAAAATCTGCATCTT 11328 >seq2430 Length=18656 Score = 116 bits (128), Expect = 9e-21 Identities = 112/144 (78%), Gaps = 0/144 (0%) Strand=Plus/Plus Query 104417 TTTCCAGCAAAAATTAGCCTCTGTTGATCAGGAGGTATTCCTTCTTTATCCTGAATCTTT 104476 || ||||||||||| | | ||||||||| ||||| || |||||||| |||||||| ||| Sbjct 5622 TTACCAGCAAAAATCAAACGCTGTTGATCCGGAGGAATCCCTTCTTTGTCCTGAATTTTT 5681 Query 104477 GCTTTTACATTTTCTACGGTATCGCTAGGTTCTACCTCTAGTGTAATAGTCTTACCAGTA 104536 ||||| |||||||| | || || | || || || || || || || || |||||| Sbjct 5682 GCTTTGACATTTTCAATCGTGTCAGACGCCTCAACTTCAAGAGTTATGGTTTTGCCAGTA 5741 Query 104537 AGTGTTTTTACAAATATCTGCATT 104560 || ||||| ||||| ||||||||| Sbjct 5742 AGCGTTTTCACAAAAATCTGCATT 5765 Score = 113 bits (124), Expect = 1e-19 Identities = 109/140 (78%), Gaps = 0/140 (0%) Strand=Plus/Plus Query 104420 CCAGCAAAAATTAGCCTCTGTTGATCAGGAGGTATTCCTTCTTTATCCTGAATCTTTGCT 104479 || |||||||| || | ||||||||| || || |||||||| ||||||||||| |||||| Sbjct 6685 CCTGCAAAAATAAGACGCTGTTGATCGGGTGGAATTCCTTCCTTATCCTGAATTTTTGCT 6744 Query 104480 TTTACATTTTCTACGGTATCGCTAGGTTCTACCTCTAGTGTAATAGTCTTACCAGTAAGT 104539 || ||||| || | || ||| || ||| || || | || || || || |||||||| Sbjct 6745 TTCACATTCTCAATTGTGTCGGAAGCTTCGACTTCCAAAGTGATTGTTTTGCCAGTAAGA 6804 Query 104540 GTTTTTACAAATATCTGCAT 104559 ||||| ||||| || ||||| Sbjct 6805 GTTTTGACAAAGATTTGCAT 6824 Score = 111 bits (122), Expect = 4e-19 Identities = 111/144 (77%), Gaps = 0/144 (0%) Strand=Plus/Plus Query 104417 TTTCCAGCAAAAATTAGCCTCTGTTGATCAGGAGGTATTCCTTCTTTATCCTGAATCTTT 104476 || ||||||||||||| | |||||||| ||||| ||||| ||||| ||||| || || Sbjct 5919 TTACCAGCAAAAATTAATCGTTGTTGATCTGGAGGAATTCCCTCTTTGTCCTGGATTTTG 5978 Query 104477 GCTTTTACATTTTCTACGGTATCGCTAGGTTCTACCTCTAGTGTAATAGTCTTACCAGTA 104536 ||||| ||||| || | || || || ||||| || || ||||| || || |||||| Sbjct 5979 GCTTTGACATTCTCAATTGTGTCTGAAGCCTCTACTTCAAGAGTAATTGTTTTTCCAGTA 6038 Query 104537 AGTGTTTTTACAAATATCTGCATT 104560 || || || ||||| ||||||||| Sbjct 6039 AGGGTCTTAACAAAGATCTGCATT 6062 Score = 107 bits (118), Expect = 4e-18 Identities = 110/144 (76%), Gaps = 0/144 (0%) Strand=Plus/Plus Query 104417 TTTCCAGCAAAAATTAGCCTCTGTTGATCAGGAGGTATTCCTTCTTTATCCTGAATCTTT 104476 || || |||||||| || | ||| || || || || || ||||| ||||||||||| ||| Sbjct 6227 TTACCTGCAAAAATAAGACGCTGCTGGTCGGGCGGGATCCCTTCCTTATCCTGAATTTTT 6286 Query 104477 GCTTTTACATTTTCTACGGTATCGCTAGGTTCTACCTCTAGTGTAATAGTCTTACCAGTA 104536 ||||| || ||||| | ||| ||| | ||| ||||| || || || || ||||| ||| Sbjct 6287 GCTTTCACGTTTTCGATGGTGTCGGACGCTTCAACCTCAAGCGTGATGGTTTTACCCGTA 6346 Query 104537 AGTGTTTTTACAAATATCTGCATT 104560 || ||||| || || || |||||| Sbjct 6347 AGGGTTTTGACGAAAATTTGCATT 6370 Score = 100 bits (110), Expect = 7e-16 Identities = 108/143 (76%), Gaps = 0/143 (0%) Strand=Plus/Plus Query 104417 TTTCCAGCAAAAATTAGCCTCTGTTGATCAGGAGGTATTCCTTCTTTATCCTGAATCTTT 104476 || ||||| ||||||| | |||||||| ||||| || ||||| || ||||||||||| Sbjct 5325 TTACCAGCGAAAATTAAACGTTGTTGATCCGGAGGAATCCCTTCCTTGTCCTGAATCTTC 5384 Query 104477 GCTTTTACATTTTCTACGGTATCGCTAGGTTCTACCTCTAGTGTAATAGTCTTACCAGTA 104536 ||||| ||||| || | ||||| | || || || || || ||||| || || ||| Sbjct 5385 GCTTTAACATTCTCAATCGTATCAGACGCCTCAACTTCGAGCGTTATAGTTTTCCCGGTA 5444 Query 104537 AGTGTTTTTACAAATATCTGCAT 104559 || ||||| || || |||||||| Sbjct 5445 AGAGTTTTAACGAAAATCTGCAT 5467 >seq285 Length=50150 Score = 93.3 bits (102), Expect = 1e-13 Identities = 107/144 (74%), Gaps = 0/144 (0%) Strand=Plus/Minus Query 104420 CCAGCAAAAATTAGCCTCTGTTGATCAGGAGGTATTCCTTCTTTATCCTGAATCTTTGCT 104479 || |||||||| | | ||| ||||| ||||| || || || ||||| || || ||||| Sbjct 46405 CCTGCAAAAATCAATCGCTGCTGATCGGGAGGAATACCCTCCTTATCTTGGATTTTTGCC 46346 Query 104480 TTTACATTTTCTACGGTATCGCTAGGTTCTACCTCTAGTGTAATAGTCTTACCAGTAAGT 104539 || || || |||| || || || ||| || || || ||||| ||||||||||| | Sbjct 46345 TTCACGTTCTCTATAGTGTCCGAAGCTTCAACTTCAAGAGTAATGGTCTTACCAGTCAAA 46286 Query 104540 GTTTTTACAAATATCTGCATTTTG 104563 ||||| || || || ||||||||| Sbjct 46285 GTTTTCACGAAAATTTGCATTTTG 46262 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1151105832545056