Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Enterobius_20vermicularis_20[genbank_20GCA_5F000951215.1_202014-09- 25] 19,832 sequences; 150,050,672 total letters Query= NC_006639.1 Length=24748 Score E Sequences producing significant alignments: (Bits) Value seq4804 181 2e-41 seq2833 154 2e-33 seq2309 127 3e-25 seq5133 95.1 2e-15 >seq4804 Length=9271 Score = 181 bits (200), Expect = 2e-41 Identities = 192/252 (76%), Gaps = 1/252 (0%) Strand=Plus/Plus Query 16454 CTTCGAGATAACATCCAAGGAATCACCAAGCCAGCTATCCGTCGTCTGGCTCGTCGTGGT 16513 ||||| ||||| |||||||| ||||| ||||| || || ||||||||||| |||||||| Sbjct 626 CTTCGTGATAATATCCAAGGCATCACTAAGCCGGCAATTCGTCGTCTGGCGCGTCGTGGC 685 Query 16514 GGAGTCAAGCGTGTCTCTGGATTGGTCTATGAAGAGATTCGTGATGTTTTGAAGATCTTC 16573 || ||||| ||| | || || | |||||||||| | |||| |||| |||| | ||| Sbjct 686 GGCGTCAAACGTATTTCGGGGCTCATCTATGAAGAAACCCGTGGTGTTCTGAAAGTATTC 745 Query 16574 CTCAAGACCGTTATCCATGATGCTTTCCACTATACCGAGCACGCTAAACGTAAGACTGTC 16633 | ||| |||||| | ||||| || ||| ||| || || ||||||||||| ||| Sbjct 746 TTAGAGAACGTTATTCGAGATGCAGTCACCTACTGCGAACATGCAAAACGTAAGACAGTC 805 Query 16634 ACCTCCATGGATATCGTCTATGCATTGAAACGTCAAGGCCGTAAGATTTATGGTTTTGGA 16693 || ||||||| | || |||||| |||| || ||||| |||| |||| ||||||||| Sbjct 806 ACAGCCATGGACGTGGTTTATGCACTGAAGCGCCAAGGACGTACACTTTACGGTTTTGGA 865 Query 16694 AGTTAATCTTCT 16705 |||||| |||| Sbjct 866 GGTTAAT-TTCT 876 >seq2833 Length=16420 Score = 154 bits (170), Expect = 2e-33 Identities = 202/276 (73%), Gaps = 4/276 (1%) Strand=Plus/Plus Query 16432 CGCTAAGCGTCATCGCAGATCTCTTCGAGATAACATCCAAGGAATCACCAAGCCAGCTAT 16491 ||| ||||||||||| | ||| || || |||||||| || || || || |||||||| Sbjct 8869 CGCCAAGCGTCATCGTAAGGTTCTCCGTGACAACATCCAGGGGATTACGAAACCAGCTAT 8928 Query 16492 CCGTCGTCTGGCTCGTCGTGGTGGAGTCAAGCGTGTCTCTGGATTGGTCTATGAAGAGAT 16551 ||||||| | ||||| || ||||| || || ||| ||||||| | ||||||| || | Sbjct 8929 CCGTCGTTTAGCTCGACGAGGTGGTGTAAAACGTATCTCTGGTCTTATCTATGAGGAAAC 8988 Query 16552 TCGTGATGTTTTGAAGATCTTCCTCAAGACCGTTATCCATGATGCTTTCCACTATAC--C 16609 ||||| || ||||| | ||||| ||| || || | |||||| | ||| ||| | Sbjct 8989 TCGTGGAGTACTGAAGGTTTTCCTGGAGAATGTGATTCGTGATGCCGT-TACT-TACTGC 9046 Query 16610 GAGCACGCTAAACGTAAGACTGTCACCTCCATGGATATCGTCTATGCATTGAAACGTCAA 16669 |||||||| || | |||||||| || | |||||| | || || || |||| || ||| Sbjct 9047 GAGCACGCGAAGAGGAAGACTGTTACAGCGATGGATGTTGTGTACGCTCTGAAGCGACAA 9106 Query 16670 GGCCGTAAGATTTATGGTTTTGGAAGTTAATCTTCT 16705 ||||| | | || ||||||||| ||||| || || Sbjct 9107 GGCCGCACCTTGTACGGTTTTGGAGGTTAAACTGCT 9142 >seq2309 Length=19303 Score = 127 bits (140), Expect = 3e-25 Identities = 184/260 (71%), Gaps = 0/260 (0%) Strand=Plus/Minus Query 16433 GCTAAGCGTCATCGCAGATCTCTTCGAGATAACATCCAAGGAATCACCAAGCCAGCTATC 16492 || ||||| ||||| | | |||||| ||||||||||| ||||| || ||||| || || Sbjct 17471 GCGAAGCGGCATCGGAAAGTTCTTCGGGATAACATCCAGGGAATTACAAAGCCTGCAATT 17412 Query 16493 CGTCGTCTGGCTCGTCGTGGTGGAGTCAAGCGTGTCTCTGGATTGGTCTATGAAGAGATT 16552 ||||| |||| || |||||||| || ||| | ||||||| | | || ||||||| | Sbjct 17411 CGTCGATTGGCACGACGTGGTGGTGTTAAGAGAATCTCTGGTCTTATTTACGAAGAGACT 17352 Query 16553 CGTGATGTTTTGAAGATCTTCCTCAAGACCGTTATCCATGATGCTTTCCACTATACCGAG 16612 | | || | || | || || ||| ||| || |||||| || ||| || Sbjct 17351 AGAGGGGTCCTTAAACTTTTTCTGGAGAACGTCATTAGAGATGCTGTCACATATTGTGAA 17292 Query 16613 CACGCTAAACGTAAGACTGTCACCTCCATGGATATCGTCTATGCATTGAAACGTCAAGGC 16672 ||||| ||| | |||||||| || | |||||| |||| ||||| |||||||| || || Sbjct 17291 CACGCAAAAAGGAAGACTGTGACGGCAATGGATGTCGTTTATGCCTTGAAACGGCAGGGA 17232 Query 16673 CGTAAGATTTATGGTTTTGG 16692 | | | |||| || || || Sbjct 17231 AGGACGCTTTACGGCTTCGG 17212 >seq5133 Length=8479 Score = 95.1 bits (104), Expect = 2e-15 Identities = 91/117 (78%), Gaps = 0/117 (0%) Strand=Plus/Plus Query 16432 CGCTAAGCGTCATCGCAGATCTCTTCGAGATAACATCCAAGGAATCACCAAGCCAGCTAT 16491 ||| ||||||||||| | || || ||||| ||||| || ||||| ||||||||||| Sbjct 7456 CGCCAAGCGTCATCGTAAGGTGCTCCGTGATAATATCCAGGGCATCACGAAGCCAGCTAT 7515 Query 16492 CCGTCGTCTGGCTCGTCGTGGTGGAGTCAAGCGTGTCTCTGGATTGGTCTATGAAGA 16548 ||||||| | ||||| || ||||| || || ||| ||||||| | ||||||| || Sbjct 7516 CCGTCGTTTAGCTCGACGGGGTGGTGTAAAACGTATCTCTGGTCTTATCTATGAGGA 7572 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 79057067463576