Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Enterobius_20vermicularis_20[genbank_20GCA_5F000951215.1_202014-09- 25] 19,832 sequences; 150,050,672 total letters Query= NC_008586.1 Length=131204 Score E Sequences producing significant alignments: (Bits) Value seq2430 113 4e-20 seq285 96.9 3e-15 >seq2430 Length=18656 Score = 113 bits (124), Expect = 4e-20 Identities = 109/140 (78%), Gaps = 0/140 (0%) Strand=Plus/Minus Query 22219 ATGCAAATTTTTGTTAAAACTTTAACCGGTAAAACGGTCACTCTTGAAGTGGAAACCACC 22278 |||||||| ||||| |||||| | || || ||||| ||||| | ||||| ||| | || Sbjct 6824 ATGCAAATCTTTGTCAAAACTCTTACTGGCAAAACAATCACTTTGGAAGTCGAAGCTTCC 6765 Query 22279 GATACCGTGGACGATATCAAACAAAAAATTCAAGACAAGGAGGGTATTCCACCCGATCAA 22338 || || | || || | ||| ||||||||| || ||||| || ||||||||||||||| Sbjct 6764 GACACAATTGAGAATGTGAAAGCAAAAATTCAGGATAAGGAAGGAATTCCACCCGATCAA 6705 Query 22339 CAACGTCTTATATTTGCCGG 22358 || |||||||| ||||| || Sbjct 6704 CAGCGTCTTATTTTTGCAGG 6685 Score = 96.9 bits (106), Expect = 3e-15 Identities = 107/143 (75%), Gaps = 0/143 (0%) Strand=Plus/Minus Query 22219 ATGCAAATTTTTGTTAAAACTTTAACCGGTAAAACGGTCACTCTTGAAGTGGAAACCACC 22278 ||||||||||| || ||||| | || |||||||| |||| ||||| || ||| | || Sbjct 6369 ATGCAAATTTTCGTCAAAACCCTTACGGGTAAAACCATCACGCTTGAGGTTGAAGCGTCC 6310 Query 22279 GATACCGTGGACGATATCAAACAAAAAATTCAAGACAAGGAGGGTATTCCACCCGATCAA 22338 || ||| | || | | ||| ||||||||| || ||||| || || || ||||| || Sbjct 6309 GACACCATCGAAAACGTGAAAGCAAAAATTCAGGATAAGGAAGGGATCCCGCCCGACCAG 6250 Query 22339 CAACGTCTTATATTTGCCGGCAA 22361 || |||||||| ||||| || || Sbjct 6249 CAGCGTCTTATTTTTGCAGGTAA 6227 Score = 91.5 bits (100), Expect = 1e-13 Identities = 106/143 (74%), Gaps = 0/143 (0%) Strand=Plus/Minus Query 22219 ATGCAAATTTTTGTTAAAACTTTAACCGGTAAAACGGTCACTCTTGAAGTGGAAACCACC 22278 ||||| |||||||| ||||| | || || ||||| | ||||||||||| || | | Sbjct 5764 ATGCAGATTTTTGTGAAAACGCTTACTGGCAAAACCATAACTCTTGAAGTTGAGGCGTCT 5705 Query 22279 GATACCGTGGACGATATCAAACAAAAAATTCAAGACAAGGAGGGTATTCCACCCGATCAA 22338 || || | || || ||||| ||||||||| ||||| || || ||||| || |||||| Sbjct 5704 GACACGATTGAAAATGTCAAAGCAAAAATTCAGGACAAAGAAGGGATTCCTCCGGATCAA 5645 Query 22339 CAACGTCTTATATTTGCCGGCAA 22361 || ||| | || ||||| || || Sbjct 5644 CAGCGTTTGATTTTTGCTGGTAA 5622 Score = 89.7 bits (98), Expect = 4e-13 Identities = 106/144 (74%), Gaps = 0/144 (0%) Strand=Plus/Minus Query 22218 GATGCAAATTTTTGTTAAAACTTTAACCGGTAAAACGGTCACTCTTGAAGTGGAAACCAC 22277 |||||| ||||| ||||||||| | ||||| ||||| | || || ||||| || | | Sbjct 5468 GATGCAGATTTTCGTTAAAACTCTTACCGGGAAAACTATAACGCTCGAAGTTGAGGCGTC 5409 Query 22278 CGATACCGTGGACGATATCAAACAAAAAATTCAAGACAAGGAGGGTATTCCACCCGATCA 22337 ||||| | || || | ||| || ||||| |||||||| || ||||| || ||||| Sbjct 5408 TGATACGATTGAGAATGTTAAAGCGAAGATTCAGGACAAGGAAGGGATTCCTCCGGATCA 5349 Query 22338 ACAACGTCTTATATTTGCCGGCAA 22361 ||||||| | || || || || || Sbjct 5348 ACAACGTTTAATTTTCGCTGGTAA 5325 Score = 82.4 bits (90), Expect = 6e-11 Identities = 102/140 (73%), Gaps = 0/140 (0%) Strand=Plus/Minus Query 22219 ATGCAAATTTTTGTTAAAACTTTAACCGGTAAAACGGTCACTCTTGAAGTGGAAACCACC 22278 ||||| ||||| || || ||| | || || ||||| | ||| | ||||| || || | Sbjct 4853 ATGCAGATTTTCGTGAAGACTCTGACAGGGAAAACAATTACTTTGGAAGTTGAGGCCTCA 4794 Query 22279 GATACCGTGGACGATATCAAACAAAAAATTCAAGACAAGGAGGGTATTCCACCCGATCAA 22338 ||||| | || || | || |||||| || ||||||||||| || || ||||| || Sbjct 4793 GATACTATCGAGAATGTTAAGGCAAAAATCCAGGACAAGGAGGGGATCCCGCCCGACCAG 4734 Query 22339 CAACGTCTTATATTTGCCGG 22358 || |||||||| ||||| || Sbjct 4733 CAGCGTCTTATTTTTGCTGG 4714 Score = 82.4 bits (90), Expect = 6e-11 Identities = 104/143 (73%), Gaps = 0/143 (0%) Strand=Plus/Minus Query 22219 ATGCAAATTTTTGTTAAAACTTTAACCGGTAAAACGGTCACTCTTGAAGTGGAAACCACC 22278 ||||||||||| ||||| || | || || |||||| | || |||||||| || | | Sbjct 5152 ATGCAAATTTTCGTTAAGACCCTTACTGGGAAAACGATAACGCTTGAAGTTGAGGCTTCG 5093 Query 22279 GATACCGTGGACGATATCAAACAAAAAATTCAAGACAAGGAGGGTATTCCACCCGATCAA 22338 || ||| | || || | ||| || ||||||||||| ||||| || || || |||||| Sbjct 5092 GACACCATTGAAAATGTGAAAGCGAAGATTCAAGACAAAGAGGGAATACCGCCGGATCAA 5033 Query 22339 CAACGTCTTATATTTGCCGGCAA 22361 || ||| | || || || || || Sbjct 5032 CAGCGTTTAATTTTCGCTGGTAA 5010 Score = 82.4 bits (90), Expect = 6e-11 Identities = 104/143 (73%), Gaps = 0/143 (0%) Strand=Plus/Minus Query 22219 ATGCAAATTTTTGTTAAAACTTTAACCGGTAAAACGGTCACTCTTGAAGTGGAAACCACC 22278 ||||| || |||||||| || | || || ||||| | ||||||||||| || | | Sbjct 6061 ATGCAGATCTTTGTTAAGACCCTTACTGGAAAAACAATTACTCTTGAAGTAGAGGCTTCA 6002 Query 22279 GATACCGTGGACGATATCAAACAAAAAATTCAAGACAAGGAGGGTATTCCACCCGATCAA 22338 || || | || || ||||| ||||| || ||||| ||||| ||||| || |||||| Sbjct 6001 GACACAATTGAGAATGTCAAAGCCAAAATCCAGGACAAAGAGGGAATTCCTCCAGATCAA 5942 Query 22339 CAACGTCTTATATTTGCCGGCAA 22361 ||||| | || ||||| || || Sbjct 5941 CAACGATTAATTTTTGCTGGTAA 5919 >seq285 Length=50150 Score = 96.9 bits (106), Expect = 3e-15 Identities = 107/143 (75%), Gaps = 0/143 (0%) Strand=Plus/Plus Query 22216 AAGATGCAAATTTTTGTTAAAACTTTAACCGGTAAAACGGTCACTCTTGAAGTGGAAACC 22275 || ||||||||||| || |||||||| || ||||| || | ||||||||||| ||| | Sbjct 46263 AAAATGCAAATTTTCGTGAAAACTTTGACTGGTAAGACCATTACTCTTGAAGTTGAAGCT 46322 Query 22276 ACCGATACCGTGGACGATATCAAACAAAAAATTCAAGACAAGGAGGGTATTCCACCCGAT 22335 | || || | || | | || |||||| ||||| |||||||||||||| |||||| Sbjct 46323 TCGGACACTATAGAGAACGTGAAGGCAAAAATCCAAGATAAGGAGGGTATTCCTCCCGAT 46382 Query 22336 CAACAACGTCTTATATTTGCCGG 22358 || || || | || ||||| || Sbjct 46383 CAGCAGCGATTGATTTTTGCAGG 46405 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 419626550693080