Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Enterobius_20vermicularis_20[genbank_20GCA_5F000951215.1_202014-09- 25] 19,832 sequences; 150,050,672 total letters Query= NC_009236.1 Length=36690 Score E Sequences producing significant alignments: (Bits) Value seq8026 156 1e-33 seq15822 107 4e-19 >seq8026 Length=4067 Score = 156 bits (172), Expect = 1e-33 Identities = 146/186 (78%), Gaps = 0/186 (0%) Strand=Plus/Plus Query 5009 TTCGCGCCCGACAGCGTGTTCCAGCTCGTGCGGCCGGACATCAATCAGGAGGTCTATGGC 5068 |||||||||| | |||||| || || || |||||| || ||||||||| | || ||| Sbjct 566 TTCGCGCCCGGCTCCGTGTTTCACCTGCTGGAGCCGGATATTAATCAGGAGCTGTACGGC 625 Query 5069 CTGCCCGAGTATCTGAGCTCGCTGCACTCGGCCTGGCTGAACGAATCGTCGACGCTGTTC 5128 ||||| || ||||| ||| | || |||| ||||||||||| || || | ||||||||| Sbjct 626 CTGCCGGAATATCTCAGCGCCCTTAACTCTGCCTGGCTGAATGAGTCAGCCACGCTGTTC 685 Query 5129 CGGCGCAAGTATTACGAGAACGGCAGCCACGCCGGCTTCATCCTGTACATGACCGACGCC 5188 || |||||||||||||| |||||| || ||||| | |||| ||||| | ||||| ||| Sbjct 686 CGCCGCAAGTATTACGAAAACGGCGCTCATGCCGGATACATCATGTACGTTACCGATGCC 745 Query 5189 GCGCAG 5194 | |||| Sbjct 746 GTGCAG 751 Score = 87.8 bits (96), Expect = 4e-13 Identities = 156/228 (68%), Gaps = 0/228 (0%) Strand=Plus/Plus Query 4661 GAGATTCTCGATTACGTCGAGTGCTGGTCGAACGGCGAATGGTTCGAGCCGCCGGTCAGC 4720 || ||||| ||||||||||||||| |||||| ||||| ||||| ||||||||| Sbjct 218 GACATTCTGGATTACGTCGAGTGCATCAGTAACGGCAGATGGTATGAGCCACCGGTCAGC 277 Query 4721 TTCGCCGGCCTGGCGAAATCGTTTCGCGCGAGCACGCACCATAGCTCGGCGCTGTTCTTC 4780 || |||| ||||| ||| | || || | ||| || ||||| || | | | || Sbjct 278 TTTACCGGTCTGGCAAAAAGCCTGCGTGCTGCCGTGCATCACAGCTCACCGATTTACGTC 337 Query 4781 AAGGCGAACGTGCTGGCGTCGACATTCCGCCCGCACCGCTGGCTGTCGCGGCACGCGTTC 4840 || || | ||||| || || || |||||||| |||||||| | ||| | ||| Sbjct 338 AAACGCAATATTCTGGCTTCAACGTTTATCCCGCACCCGTGGCTGTCCCAGCAGGATTTC 397 Query 4841 GAGCGGTGGGCGCTCGATTTCCTGACGTTCGGCAACGGCTATCTGGAA 4888 || | | ||| ||||| ||| |||||| || | | ||||||| Sbjct 398 AGCCGCTTTGTGCTGGATTTTCTGGTGTTCGGTAATGCGTTTCTGGAA 445 >seq15822 Length=778 Score = 107 bits (118), Expect = 4e-19 Identities = 301/458 (66%), Gaps = 13/458 (3%) Strand=Plus/Plus Query 3204 TTCGACTATCAGAAAGTCTGGTATCGGAACGGC---GATCAGCGCACGCGCAACATCCTG 3260 |||||||||||| ||||||||| ||| || || |||| ||| | |||||| Sbjct 246 TTCGACTATCAGTTGCACTGGTATCGCGCCGGGCTTGAGCACCGCATCCGCGATATCCTG 305 Query 3261 AAATCGCGGCAGATCGGTGCGACGTGGTACTTCGCGCGCGAGGCGCTCGTCGACGCCCTC 3320 ||||| || ||||| || || |||| || || | ||||||||||| | |||||| Sbjct 306 AAATCCCGCCAGATTGGCGCAACGTTTTATTTTTCCCGCGAGGCGCTGCTGCGCGCCCTG 365 Query 3321 GACACCGACCGTAATCAAATCTTCCTGTCGGCGAGCAAGGCTCAGGCGCACGTCTTCAAG 3380 | |||| | ||| || || || |||||||| || || | |||||| | || ||| Sbjct 366 AAAACCGGTCATAACCAGATTTTTCTGTCGGCCAGTAAAACGCAGGCGTATGTGTTCCGC 425 Query 3381 CAGTACATCA-CGCAGTTCGCGCGCGCGGC-GGCCGACATCGAGCTCACGGGCGATCCGA 3438 | ||||||| ||| || || | | || ||| | || || || || || |||| Sbjct 426 GAATACATCATCGCCTTT-----GCCCATCTGGTTGACGTTGACCTTACCGGTGACCCGA 480 Query 3439 TCATCTTG---CCGAGCGGCGCGACGCTGTACTTCCTGGGGACGAACGCGCGCACCGCGC 3495 | || || | |||||| | ||| || || || || ||| | |||||||| Sbjct 481 TTGTCCTGGGCAATAACGGCGCAAAACTGATTTTTCTCGGCACCAACTCCAACACCGCGC 540 Query 3496 AGTCGTACCACGGCAACTTCTACTTCGACGAATACTTTTGGGTTCCGAAGTTCCGCGAGC 3555 || | ||||| || | ||| ||||||| || ||| | ||||| || | | | Sbjct 541 AGAGCCATAACGGCGACCTGTACGTCGACGAGATTTTCTGGATCCCGAATTTTCAGGTAC 600 Query 3556 TGAACAAGGTCGCCTCCGGCATGGCGATGCACAAGCGCTGGCGCAAGACTTACTTCAGCA 3615 || ||||| || || || ||||| || | | | |||| ||| || ||| || Sbjct 601 TGCGTAAGGTGGCATCAGGTATGGCCTCACAGAGTCACCTGCGCTCGACCTATTTCTCCA 660 Query 3616 CGCCGTCCAGCGTCACGCACGAGGCGTACGCGTTCTGG 3653 | ||||||| | ||||||| || ||| |||||||| Sbjct 661 CCCCGTCCACGCTGGCGCACGACGCCTACCCGTTCTGG 698 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 117258778466368