Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Enterobius_20vermicularis_20[genbank_20GCA_5F000951215.1_202014-09- 25] 19,832 sequences; 150,050,672 total letters Query= NC_014649.1 Length=1181549 Score E Sequences producing significant alignments: (Bits) Value seq1516 138 9e-27 seq328 136 3e-26 seq267 109 4e-18 seq2374 107 1e-17 seq318 91.5 1e-12 >seq1516 Length=25419 Score = 138 bits (152), Expect = 9e-27 Identities = 281/415 (68%), Gaps = 2/415 (0%) Strand=Plus/Minus Query 517213 ATTAGTAATAGTAATATTCTTGGATTTGTTTGTTGATTTATCAGCGGCAGTCACATTAAG 517272 ||| ||||| || || || || |||| || || || || ||||| ||||| | Sbjct 7851 ATTTGTAATCGTTATCTTGTTATGTTTGCCAGTCGACTTGTCCTGTGCAGTAACATTCAA 7792 Query 517273 AATACCATTGGCATCCAAATCAAATGTGACTTCAATTTGAGGGACCCCTCTCTGAGCAGG 517332 || ||||||||||| | |||||| || ||||| || || || || || ||| |||| || Sbjct 7791 GATGCCATTGGCATCAATATCAAACGTAACTTCTATCTGCGGTACACCCCTCGGAGCTGG 7732 Query 517333 TGGGATCCCTTCCAAATTAAATGTTCCCAGATTATTATTATCTTTAGTGAATTTTCGTTC 517392 |||||| || || | || | || ||| ||||||||| || || | ||||| Sbjct 7731 TGGGATACCGGATAATTCGAACTTGCCAAGAAGATTATTATCCTTTGTCATAGCACGTTC 7672 Query 517393 ACCCTCGAAAATTTGGATAGTAACTACAGTTTGATTATCTGAATAAGTTGTAAATACTCT 517452 ||||||| ||| || || ||| ||| || || || || || || |||||| ||| Sbjct 7671 ACCCTCGTAAACCTGAATCAACACTCCAGGCTGGTTGTCAGAGTATGTAGTAAAT-GTCT 7613 Query 517453 G-GATTTTTTACAAGGAATTGTTGTGTTTCTATCAATAATATTGGTCATAATACCACCTG 517511 | || |||| || ||||||||||| || | || | | ||||| | || || | Sbjct 7612 GAGAAGTTTTCGTTGGGATTGTTGTGTTCCTCTTGATCAAAGACGTCATCACTCCGCCAG 7553 Query 517512 CTGTTTCTAAACCAAGAGAAAGAGGAGTGACATCAACTAGGACAATATTTTGAAGTTTTT 517571 | ||||| | ||| | |||||| |||| ||||||| || | | || ||| | | | Sbjct 7552 CAGTTTCAATACCCAAAGAAAGCGGAGCTACATCAAGCAGAAGCAGATCTTGTACGGTCT 7493 Query 517572 CATCAGTTTGACCAACAAGAATAGCTGCTTGAATAGCAGCACCATATGCAACAGC 517626 || | | ||| ||| ||||||||||||| || || ||||| || ||||| Sbjct 7492 CAGACTTGTCTCCAGAAAGGATAGCTGCTTGAACTGCTGCGCCATAAGCCACAGC 7438 Score = 120 bits (132), Expect = 2e-21 Identities = 105/131 (80%), Gaps = 0/131 (0%) Strand=Plus/Minus Query 518176 ACCATACGCAAAAGCAGCAGCAGTTGGTTCATTAATAATTCTCAAAACATTAAGACCAGC 518235 ||||||||||| |||||| |||||||| ||||| ||||| | | |||||||| || || Sbjct 6495 ACCATACGCAATAGCAGCTGCAGTTGGCTCATTTATAATACGAAGCACATTAAGTCCTGC 6436 Query 518236 AATTCTTCCTGCATCTTTAGTGGCTTGTCTTTGTGAATCGTTAAAATATGCAGGAACAGT 518295 |||| ||||||||| || || || || | ||||||||||||||||| || || ||||| Sbjct 6435 AATTGCTCCTGCATCCTTCGTAGCCTGCCGCTGTGAATCGTTAAAATACGCCGGGACAGT 6376 Query 518296 AATAACGGCAT 518306 || || |||| Sbjct 6375 AACTACTGCAT 6365 >seq328 Length=47871 Score = 136 bits (150), Expect = 3e-26 Identities = 181/249 (73%), Gaps = 8/249 (3%) Strand=Plus/Plus Query 518447 ACTTTAAATGGCCAGTATTTCATATCTGATTGAACACTTTGGTCATTAAAATCTCTACCA 518506 || || || ||||| ||||||||| || || | | ||||| | ||||| ||| Sbjct 29650 ACCTTGAACGGCCAAACTTTCATATCGTCCTGTACTGTCTTATCATTGTATTCTCTGCCA 29709 Query 518507 ATTAATCGTTTTGCATCAAAAATAGTATTGGTTGGATTAATTGCAGCTTGATATTTGGCT 518566 || || ||||| |||||||||| || || ||||||||| | | |||| ||||||| Sbjct 29710 ATCAAACGTTTCGCATCAAAAACGGTGTTTTCTGGATTAATAGTAAGCTGATTTTTGGCT 29769 Query 518567 GCATCTCCAATCAGATGTTCT-----GTCTCT-GTAAATGAAACATATGATGGAGTTGTG 518620 ||||| ||||| | | ||||| || || || |||| ||||||||||||||| | Sbjct 29770 GCATCACCAATTAAACGTTCTCCAGAATCACTAGTGAATGCAACATATGATGGAGTAATA 29829 Query 518621 CGATTACCTTGATCATTCGCAATAATTTCAACTTTACCATTTTGCCATACACCTACACAA 518680 || || |||||||| || ||||| ||||||||| ||||| | | ||||| |||||| Sbjct 29830 CGGTTGCCTTGATCGTTGGCAATTATTTCAACTCGTCCATTCTTATAAACACCGACACAA 29889 Query 518681 CT--AAAAG 518687 || ||||| Sbjct 29890 CTGGAAAAG 29898 Score = 127 bits (140), Expect = 2e-23 Identities = 159/218 (73%), Gaps = 0/218 (0%) Strand=Plus/Plus Query 518165 TTTTTATCAAGACCATACGCAAAAGCAGCAGCAGTTGGTTCATTAATAATTCTCAAAACA 518224 || ||||| || ||||| |||| ||| || || ||||||||||| ||||| | || ||| Sbjct 29269 TTCTTATCCAGGCCATAAGCAATAGCTGCCGCTGTTGGTTCATTGATAATACGCACTACA 29328 Query 518225 TTAAGACCAGCAATTCTTCCTGCATCTTTAGTGGCTTGTCTTTGTGAATCGTTAAAATAT 518284 |||||||||||||| | || |||||||| || ||||| || |||| ||| || || || Sbjct 29329 TTAAGACCAGCAATAGTGCCAGCATCTTTTGTCGCTTGCCTCTGTGCATCATTGAAGTAA 29388 Query 518285 GCAGGAACAGTAATAACGGCATCAGTTACTTCTTTACCAATATAAGCGCTTGCCGTTTGT 518344 || || ||||| | || |||| | | |||||||||| ||| | || | | Sbjct 29389 GCTGGTACAGTGACGACCGCATGTTTGATCTCTTTACCAAGATACGACTCCGCAATCTCC 29448 Query 518345 TTCATTTTACTTAAAATCATTGATGAAATTTGTTCTGG 518382 |||||||| | |||| ||| | ||||||| ||| || Sbjct 29449 TTCATTTTTCCCAAAACCATAGCAGAAATTTCTTCAGG 29486 >seq267 Length=51418 Score = 109 bits (120), Expect = 4e-18 Identities = 110/143 (77%), Gaps = 0/143 (0%) Strand=Plus/Plus Query 518165 TTTTTATCAAGACCATACGCAAAAGCAGCAGCAGTTGGTTCATTAATAATTCTCAAAACA 518224 |||||||| || |||||||||| ||| ||||| || |||||||| || |||| | ||| Sbjct 29269 TTTTTATCCAGCCCATACGCAATAGCTGCAGCTGTAGGTTCATTGATGATTCGAAGAACG 29328 Query 518225 TTAAGACCAGCAATTCTTCCTGCATCTTTAGTGGCTTGTCTTTGTGAATCGTTAAAATAT 518284 || | || |||||| ||||||||||| || || || | ||||| || || |||||| Sbjct 29329 TTTAATCCTGCAATTGCACCTGCATCTTTTGTAGCCTGACGCTGTGAGTCATTGAAATAT 29388 Query 518285 GCAGGAACAGTAATAACGGCATC 518307 || || ||||||| ||| || || Sbjct 29389 GCTGGCACAGTAACAACAGCGTC 29411 Score = 89.7 bits (98), Expect = 4e-12 Identities = 127/179 (71%), Gaps = 0/179 (0%) Strand=Plus/Plus Query 517163 GCTTCTCTAATCATTCTCTCAATTTGATCTTCAGAGAATCTTCCGCGATTATTAGTAATA 517222 |||||| || |||| | ||||| | ||| | || | | || || ||| ||||| Sbjct 27752 GCTTCTTGAACCATTTTTTCAATATCATCCTTTGACAGCCGACCCTTATCATTTGTAATG 27811 Query 517223 GTAATATTCTTGGATTTGTTTGTTGATTTATCAGCGGCAGTCACATTAAGAATACCATTG 517282 || || || || |||| |||||| || || || | ||||| | ||| ||||| Sbjct 27812 GTGATTTTGTTATGTTTGCCTGTTGACTTGTCTTGTGCCGAGACATTCAAAATGCCATTC 27871 Query 517283 GCATCCAAATCAAATGTGACTTCAATTTGAGGGACCCCTCTCTGAGCAGGTGGGATCCC 517341 ||||| | |||||| ||||||||||||||||| || || | | ||||||| ||||| || Sbjct 27872 GCATCAATATCAAAGGTGACTTCAATTTGAGGCACACCGCGCGGAGCAGGCGGGATACC 27930 Score = 87.8 bits (96), Expect = 1e-11 Identities = 96/128 (75%), Gaps = 0/128 (0%) Strand=Plus/Plus Query 322244 CCGTATGCAAGAGCTGCTGCAGTTGGTTCATTAATTATTTTAAGAACATCTAAACCCGCA 322303 || || |||| |||||| || || |||||||| || ||| |||||| | ||| || ||| Sbjct 29281 CCATACGCAATAGCTGCAGCTGTAGGTTCATTGATGATTCGAAGAACGTTTAATCCTGCA 29340 Query 322304 ATTTTAGCAGAATCAAGAGTTGCTTGTCTCTGTGCGTCATTAAAATATGCTGGTACAGTA 322363 ||| | | | ||| || || || | ||||| |||||| ||||||||||| |||||| Sbjct 29341 ATTGCACCTGCATCTTTTGTAGCCTGACGCTGTGAGTCATTGAAATATGCTGGCACAGTA 29400 Query 322364 ATAACTGC 322371 | ||| || Sbjct 29401 ACAACAGC 29408 >seq2374 Length=18952 Score = 107 bits (118), Expect = 1e-17 Identities = 115/152 (76%), Gaps = 0/152 (0%) Strand=Plus/Plus Query 841327 TATTTGTGTGGTACTGATGAATATGGAACTACAACAATGATTAGAGCTCGTAAGGAAGGT 841386 ||| | ||||| || ||||| || || ||| ||||| || | ||||| || |||||| Sbjct 9397 TATATTTGTGGGACAGATGAGTACGGTACTGCAACAGAGACAAAAGCTCTGAAAGAAGGT 9456 Query 841387 GTAACTTGTCGTGAACTTTGTGATAAGTATTTTGAGTTACACAAAAAAGTTTATGATTGG 841446 |||||| ||| ||| |||||||||| ||| || | ||| | || ||||||||||| Sbjct 9457 GTAACTCCTCGAGAAATTTGTGATAAATATAATGCTCTTCACCGAGAAATTTATGATTGG 9516 Query 841447 TTTAATATTGAATTTGATGTTTTTGGTAGAAC 841478 || |||||||| |||||| |||||| |||| Sbjct 9517 TTCAATATTGAGTTTGATCATTTTGGCCGAAC 9548 >seq318 Length=48443 Score = 91.5 bits (100), Expect = 1e-12 Identities = 98/130 (75%), Gaps = 0/130 (0%) Strand=Plus/Minus Query 635441 TGTACCCTAATTTTGACAGAGGGAGATTCAGCTAAAACATTCGCTATGTCTGGTCTTAAT 635500 |||||| |||||||||| ||||| |||||||| ||| | || ||| | ||||| ||| Sbjct 21162 TGTACCTTAATTTTGACGGAGGGCGATTCAGCAAAATCTTTAGCTGTCTCTGGCCTTGGA 21103 Query 635501 GTTATTGGAAGAGATTATTATGGAGTTTTCCCACTTAGAGGAAAACTTTTGAATGTTAGG 635560 ||| |||| | ||| ||||| || ||||| ||| | || ||| | ||||||||||| Sbjct 21102 GTTGTTGGTCGTGATAGGTATGGCGTCTTCCCTCTTCGCGGTAAAATGTTGAATGTTAGA 21043 Query 635561 GATGCTAGTC 635570 || | |||| Sbjct 21042 GAAGGAAGTC 21033 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 3779838270833392