Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Enterobius_20vermicularis_20[genbank_20GCA_5F000951215.1_202014-09- 25] 19,832 sequences; 150,050,672 total letters Query= NC_014765.1 Length=198519 Score E Sequences producing significant alignments: (Bits) Value seq328 159 4e-34 seq267 122 1e-22 seq1516 104 3e-17 seq197 82.4 1e-10 >seq328 Length=47871 Score = 159 bits (176), Expect = 4e-34 Identities = 179/237 (76%), Gaps = 2/237 (1%) Strand=Plus/Plus Query 7595 TTCTTATCGAGACCGTACGCGATAGCCGCCGCCGTTGGTTCATTAATAATACG-AAGACA 7653 |||||||| || || || || ||||| ||||| ||||||||||| |||||||| | ||| Sbjct 29269 TTCTTATCCAGGCCATAAGCAATAGCTGCCGCTGTTGGTTCATTGATAATACGCACTACA 29328 Query 7654 GTTCAGGCCAGCAATAGTTGCCGCATCTTTCGTCGCTTGTCGTTGCGAATCGTTAAAGTA 7713 || || ||||||||||| | |||||||| |||||||| | || | ||| || ||||| Sbjct 29329 -TTAAGACCAGCAATAGTGCCAGCATCTTTTGTCGCTTGCCTCTGTGCATCATTGAAGTA 29387 Query 7714 GGCCGGGACCGTTACGACCGCGTCCGTGACTTTCTTACCGAGATACGATTCCGCGATATC 7773 || || || || |||||||| | ||| | ||||| |||||||| ||||| || || Sbjct 29388 AGCTGGTACAGTGACGACCGCATGTTTGATCTCTTTACCAAGATACGACTCCGCAATCTC 29447 Query 7774 TTTCATTTTGGTAAGAACCATCGATGAAATCTCTTCAGCCGCAAACTGTTTCGTTTC 7830 |||||||| | |||||| | ||||| ||||||| ||||| |||||| || Sbjct 29448 CTTCATTTTTCCCAAAACCATAGCAGAAATTTCTTCAGGAGCAAATGTTTTCGTGTC 29504 >seq267 Length=51418 Score = 122 bits (134), Expect = 1e-22 Identities = 184/259 (71%), Gaps = 2/259 (1%) Strand=Plus/Plus Query 7058 TCATCGGGGTTAATCGTTTTATTCAGTTCTTTACCGTTAAAATAA-TCCGATAACATTTG 7116 ||||| || ||||| | |||||||||||||| || | | || || ||||||| || || Sbjct 28376 TCATCCGGATTAATGCTCTTATTCAGTTCTTTGCC-TGAGAAGAAGTCCGATAGCAATTT 28434 Query 7117 TTGAATTTTCGGGATTCGTGTCGATCCACCGACCAAAACGATTTCATTCACTTTCGATTT 7176 |||| |||||| || || || || ||||| || | ||| || |||| || | || || Sbjct 28435 CTGAACTTTCGGAATACGGGTGGAACCACCAACAAGAACAATGTCATGCATCTGAGACTT 28494 Query 7177 ATCGATCTTTGAGTCTCGAAGTGTTTTTTCGACAGGTTCCATACATTTACGGAACAAGTC 7236 || || |||| || ||||| | ||||| || || ||||| ||||||||| || Sbjct 28495 GTCCATTTTTGCATCGCGAAGAGCCTTTTCCACTGGGTCCATTGTGGAACGGAACAAATC 28554 Query 7237 CATACACAGTTCCTCAAAACGTGCACGGGTAATGGATGTATAGAAATCAACGCCGTCGTA 7296 | | ||| |||||||| ||||| || ||| || ||||| |||| || ||| | Sbjct 28555 AGCATTTAATTCTTCAAAACGAGCACGAGTGATGTTGGTGTAGAAGTCAATACCCTCGAA 28614 Query 7297 TAACGAATCAATTTCAATG 7315 | ||||| ||||||||| Sbjct 28615 CAGAGAATCTATTTCAATG 28633 Score = 118 bits (130), Expect = 1e-21 Identities = 213/308 (69%), Gaps = 4/308 (1%) Strand=Plus/Plus Query 6529 TTCGAGACCATTCTTCGCCTCGAC-CTTTTTCGC-GTACTTTTCATCTTCATCTTTATAC 6586 |||||||| ||||| || | || | || || | || ||| |||| || | || ||| Sbjct 27688 TTCGAGACTGTTCTTTGCAGCCACTCGTTCTCTCTGTGCTT--CATCATCGGCCTTGTAC 27745 Query 6587 TTTTCCGCATCTTGGACCATCTTTTCAATGTCTTCTTTCGATAATCTCCCCTTATCATTC 6646 || || || ||||| ||||| |||||||| || || || || | | ||||||||||| Sbjct 27746 TTCTCGGCTTCTTGAACCATTTTTTCAATATCATCCTTTGACAGCCGACCCTTATCATTT 27805 Query 6647 GTAATCGTAATCTTTTCGGATTTACCCGAGGCCTTATCTTCAGCACTTACATTCAAAATA 6706 ||||| || || || | ||| || | | ||| |||| || ||||||||||| Sbjct 27806 GTAATGGTGATTTTGTTATGTTTGCCTGTTGACTTGTCTTGTGCCGAGACATTCAAAATG 27865 Query 6707 CCATTTGCATCAACATCGAACCTTACATTAATTTGTGGTGTACCCCTCGGTGCGGCTGGA 6766 ||||| ||||||| ||| || | || | |||||| || ||| | ||| || | || Sbjct 27866 CCATTCGCATCAATATCAAAGGTGACTTCAATTTGAGGCACACCGCGCGGAGCAGGCGGG 27925 Query 6767 ATACCCGTTAAATCAAATGTACCAAGTAAACTGTTATCCGTCGCCTTCTTACGTTCACCT 6826 ||||||| || ||||| | || | | | || ||| ||| | | |||| |||||| Sbjct 27926 ATACCCGACAACTCAAACTTGCCCAACAGGTTATTGTCCTTCGTCATAGTACGCTCACCT 27985 Query 6827 TCATAGAC 6834 ||||| || Sbjct 27986 TCATATAC 27993 >seq1516 Length=25419 Score = 104 bits (114), Expect = 3e-17 Identities = 109/141 (77%), Gaps = 2/141 (1%) Strand=Plus/Minus Query 7595 TTCTTATCGAGACCGTACGCGATAGCCGCCGCCGTTGGTTCATTAATAATACGAAG-ACA 7653 |||| || | ||| ||||| ||||| || || ||||| ||||| ||||||||||| ||| Sbjct 6506 TTCTGGTCCAAACCATACGCAATAGCAGCTGCAGTTGGCTCATTTATAATACGAAGCACA 6447 Query 7654 GTTCAGGCCAGCAATAGTTGCCGCATCTTTCGTCGCTTGTCGTTGCGAATCGTTAAAGTA 7713 || || || ||||| | | | ||||| ||||| || || || || ||||||||||| || Sbjct 6446 -TTAAGTCCTGCAATTGCTCCTGCATCCTTCGTAGCCTGCCGCTGTGAATCGTTAAAATA 6388 Query 7714 GGCCGGGACCGTTACGACCGC 7734 |||||||| || || || || Sbjct 6387 CGCCGGGACAGTAACTACTGC 6367 >seq197 Length=56337 Score = 82.4 bits (90), Expect = 1e-10 Identities = 127/179 (71%), Gaps = 2/179 (1%) Strand=Plus/Minus Query 184208 CTCGCGTCACGCACGTTCTTACATTT-ACCCCTAAGCGGAAAAACACCGTAATGATCACG 184266 ||| | || |||||||| | |||||| ||| | | ||| || || || || | ||| || Sbjct 52046 CTCCCTTCTCGCACGTT-TAACATTTTACCACGTAACGGGAAGACGCCATACTTATCGCG 51988 Query 184267 ACCAACAACTGAAAGACCAGCAATTGCAAGTGTTTTTGCAGAATCACCTTCGGTAATAAT 184326 ||||||||| | |||| || || || | |||||| ||||| || || |||| ||| Sbjct 51987 ACCAACAACACCCAAGCCAGAAACAGCCAGAGATTTTGCTGAATCCCCCTCCGTAAGAAT 51928 Query 184327 AAGAGTACACTTACCAGAGTGTGTGGTACCGGCTTTATTGGCATCGTCGAGTTTTGGAA 184385 ||| |||||| | | || | | || || || | ||| ||||| || | |||||||| Sbjct 51927 AAGCGTACACAAAGCGGAATTCTTCGTGCCTGCGTCATTAGCATCTTCCAATTTTGGAA 51869 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 634975350578880