Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Enterobius_20vermicularis_20[genbank_20GCA_5F000951215.1_202014-09- 25] 19,832 sequences; 150,050,672 total letters Query= NC_016072.1 Length=1259197 Score E Sequences producing significant alignments: (Bits) Value seq1516 149 5e-30 seq328 149 5e-30 seq267 131 1e-24 seq2430 95.1 1e-13 seq767 89.7 4e-12 seq285 87.8 1e-11 >seq1516 Length=25419 Score = 149 bits (164), Expect = 5e-30 Identities = 255/370 (69%), Gaps = 0/370 (0%) Strand=Plus/Plus Query 552220 AGGCTGTTGCCTATGGTGCCGCAATTCAAGCAGCTATTCTTTCTGGACAAACTGATGAAA 552279 ||||||| || ||||| || ||| ||||||||||||| ||||||||| | | ||| | Sbjct 7436 AGGCTGTGGCTTATGGCGCAGCAGTTCAAGCAGCTATCCTTTCTGGAGACAAGTCTGAGA 7495 Query 552280 AACTACAAAATATTGTACTTGTAGATGTTACTCCTCTATCTCTTGGTTTAGAAACAGTTG 552339 ||||| || | | || | ||||| |||| || ||| | ||| | ||||| | || Sbjct 7496 CCGTACAAGATCTGCTTCTGCTTGATGTAGCTCCGCTTTCTTTGGGTATTGAAACTGCTG 7555 Query 552340 GAGGTATTATGACTAATCTTATCGATAGAAATACTACTATTCCTTGTAAAAAATCTCGTG 552399 | || | ||||| | | ||| | || || || || || || |||| |||| Sbjct 7556 GCGGAGTGATGACGTCTTTGATCAAGAGGAACACAACAATCCCAACGAAAACTTCTCAGA 7615 Query 552400 TATTTTCTACGTATTCAGATAATCAAACTGCTGTTACAATTCAAATTTTTGAAGGAGAAA 552459 |||| |||| || || || || || ||| || ||||| ||| || || ||| Sbjct 7616 CATTTACTACATACTCTGACAACCAGCCTGGAGTGTTGATTCAGGTTTACGAGGGTGAAC 7675 Query 552460 GAAAATTCACTAAAGATAATAATCAACTTGGTACTTTTAATTTAGAAGGTATTCCTCCTG 552519 | | || || |||||||||| ||||| | || | ||| ||||| || || | Sbjct 7676 GTGCTATGACAAAGGATAATAATCTTCTTGGCAAGTTCGAATTATCCGGTATCCCACCAG 7735 Query 552520 CTCCTCGTGGAGTACCGCAAATTGAAGTTACTTTCGATATCGATGCCAATGGAATTTTGA 552579 |||| | || |||||||| || |||||||| || ||||| ||||||||||| || |||| Sbjct 7736 CTCCGAGGGGTGTACCGCAGATAGAAGTTACGTTTGATATTGATGCCAATGGCATCTTGA 7795 Query 552580 ATGTGACTGC 552589 |||| ||||| Sbjct 7796 ATGTTACTGC 7805 Score = 122 bits (134), Expect = 7e-22 Identities = 105/130 (81%), Gaps = 0/130 (0%) Strand=Plus/Plus Query 550398 ATGCAGTAATAACTGTACCAGCATATTTTAATGACTCACAACGTCAAGCTACTAAAGATG 550457 |||||||| | ||||| || || |||||||| || ||||| || || ||||| || |||| Sbjct 6365 ATGCAGTAGTTACTGTCCCGGCGTATTTTAACGATTCACAGCGGCAGGCTACGAAGGATG 6424 Query 550458 CTGGACGTATTGCTGGACTTAATGTTCTTCGTATTATCAATGAACCTACTGCTGCTGCAC 550517 | ||| ||||| ||||||||||| ||||||||||| ||||| || ||||| ||||| Sbjct 6425 CAGGAGCAATTGCAGGACTTAATGTGCTTCGTATTATAAATGAGCCAACTGCAGCTGCTA 6484 Query 550518 TTGCATATGG 550527 |||| ||||| Sbjct 6485 TTGCGTATGG 6494 >seq328 Length=47871 Score = 149 bits (164), Expect = 5e-30 Identities = 176/237 (74%), Gaps = 6/237 (3%) Strand=Plus/Minus Query 550022 AGTTGTGTTGGTGTTTGGCAAAATGGTAAAGTTGAAATTATTGCCAATGATCAAGGTAAC 550081 |||||||| ||||||| | ||||| ||||||||| |||||||| |||||||| ||| Sbjct 29891 AGTTGTGTCGGTGTTTATAAGAATGGACGAGTTGAAATAATTGCCAACGATCAAGGCAAC 29832 Query 550082 AGAACTACTCCATCTTATGTTTCTTTCACG---GAAACTG---AACATTTAGTTGGTGAT 550135 | | ||||||||| |||||| | ||||| || ||| ||| |||| |||||||| Sbjct 29831 CGTATTACTCCATCATATGTTGCATTCACTAGTGATTCTGGAGAACGTTTAATTGGTGAT 29772 Query 550136 GCAGCAAAATATCAAGCCACTGGTAATCCTACCAATACTATTTTTGATGCTAAACGTTTA 550195 ||||| ||| |||| ||| |||||| || || |||||||||| |||||||| Sbjct 29771 GCAGCCAAAAATCAGCTTACTATTAATCCAGAAAACACCGTTTTTGATGCGAAACGTTTG 29712 Query 550196 ATTGGAAGAAGTTTTAATGATTCGACTGTTCAGGCAGATATGAAGCATTGGCCTTTC 550252 ||||| ||| | |||||| ||| || |||| |||||||| |||||| ||| Sbjct 29711 ATTGGCAGAGAATACAATGATAAGACAGTACAGGACGATATGAAAGTTTGGCCGTTC 29655 Score = 134 bits (148), Expect = 1e-25 Identities = 169/228 (74%), Gaps = 3/228 (1%) Strand=Plus/Minus Query 550310 AAACAATTTTCACCAGAACAAATTTCATCTATGGTTTTAATGAAAATGAAACAAACAGCC 550369 ||||| ||| | || ||| ||||||| |||||||||| |||||||| | | || Sbjct 29497 AAACA-TTTGCTCCTGAAGAAATTTCTGCTATGGTTTTGGGAAAAATGAAGGAGATTGCG 29439 Query 550370 -AGTGCTTTTGTTGGTCAAGAAGTTACGGATGCAGTAATAACTGTACCAGCATATTTTAA 550428 ||| | | | ||||| |||| | | |||| || | ||||||||||| || || || Sbjct 29438 GAGT-CGTATCTTGGTAAAGAGATCAAACATGCGGTCGTCACTGTACCAGCTTACTTCAA 29380 Query 550429 TGACTCACAACGTCAAGCTACTAAAGATGCTGGACGTATTGCTGGACTTAATGTTCTTCG 550488 ||| |||| | ||||| || ||||||||||| ||||||||| |||||||| | || Sbjct 29379 TGATGCACAGAGGCAAGCGACAAAAGATGCTGGCACTATTGCTGGTCTTAATGTAGTGCG 29320 Query 550489 TATTATCAATGAACCTACTGCTGCTGCACTTGCATATGGACTTGATAA 550536 ||||||||||||||| || || || || |||| ||||| || ||||| Sbjct 29319 TATTATCAATGAACCAACAGCGGCAGCTATTGCTTATGGCCTGGATAA 29272 >seq267 Length=51418 Score = 131 bits (144), Expect = 1e-24 Identities = 114/142 (80%), Gaps = 0/142 (0%) Strand=Plus/Minus Query 550396 GGATGCAGTAATAACTGTACCAGCATATTTTAATGACTCACAACGTCAAGCTACTAAAGA 550455 ||| || || | ||||| ||||||||||| ||||||||||| ||||| ||||| ||||| Sbjct 29412 GGACGCTGTTGTTACTGTGCCAGCATATTTCAATGACTCACAGCGTCAGGCTACAAAAGA 29353 Query 550456 TGCTGGACGTATTGCTGGACTTAATGTTCTTCGTATTATCAATGAACCTACTGCTGCTGC 550515 ||| || ||||| ||| | || |||||||| || |||||||||||||| ||||| || Sbjct 29352 TGCAGGTGCAATTGCAGGATTAAACGTTCTTCGAATCATCAATGAACCTACAGCTGCAGC 29293 Query 550516 ACTTGCATATGGACTTGATAAA 550537 |||| ||||| || |||||| Sbjct 29292 TATTGCGTATGGGCTGGATAAA 29271 >seq2430 Length=18656 Score = 95.1 bits (104), Expect = 1e-13 Identities = 107/141 (76%), Gaps = 2/141 (1%) Strand=Plus/Plus Query 563335 CCGGCAAAAATAAGTCTTTGCTGATCAGGAGGAATTCCTTCTTTATCTTGAATTTTTTGT 563394 || ||||||||||| | || ||||| || ||||||||||| ||||| ||||||||| | Sbjct 6685 CCTGCAAAAATAAGACGCTGTTGATCGGGTGGAATTCCTTCCTTATCCTGAATTTTTGCT 6744 Query 563395 TTTACTGCCTCAATTGTATCAG-TGTGAGTACATTCGAGAGTAACAGTTTTACCAGTAAG 563453 || || ||||||||| || | | || ||| | ||| | ||||| |||||||| Sbjct 6745 TTCACATTCTCAATTGTGTCGGAAGCTTCGAC-TTCCAAAGTGATTGTTTTGCCAGTAAG 6803 Query 563454 AGTTTTAACGAAAATTTGCAT 563474 |||||| || || |||||||| Sbjct 6804 AGTTTTGACAAAGATTTGCAT 6824 Score = 91.5 bits (100), Expect = 1e-12 Identities = 106/143 (74%), Gaps = 0/143 (0%) Strand=Plus/Plus Query 563332 TTTCCGGCAAAAATAAGTCTTTGCTGATCAGGAGGAATTCCTTCTTTATCTTGAATTTTT 563391 || || || ||||| | | ||| ||||| |||||||| ||||| || || ||||| || Sbjct 5325 TTACCAGCGAAAATTAAACGTTGTTGATCCGGAGGAATCCCTTCCTTGTCCTGAATCTTC 5384 Query 563392 TGTTTTACTGCCTCAATTGTATCAGTGTGAGTACATTCGAGAGTAACAGTTTTACCAGTA 563451 ||| || |||||| ||||||| | |||||| || | |||||| || ||| Sbjct 5385 GCTTTAACATTCTCAATCGTATCAGACGCCTCAACTTCGAGCGTTATAGTTTTCCCGGTA 5444 Query 563452 AGAGTTTTAACGAAAATTTGCAT 563474 ||||||||||||||||| ||||| Sbjct 5445 AGAGTTTTAACGAAAATCTGCAT 5467 Score = 91.5 bits (100), Expect = 1e-12 Identities = 108/144 (75%), Gaps = 2/144 (1%) Strand=Plus/Plus Query 563332 TTTCCGGCAAAAATAAGTCTTTGCTGATCAGGAGGAATTCCTTCTTTATCTTGAATTTTT 563391 || || |||||||| | || ||| ||||| ||||||||||| ||||| || || ||||| Sbjct 5919 TTACCAGCAAAAATTAATCGTTGTTGATCTGGAGGAATTCCCTCTTTGTCCTGGATTTTG 5978 Query 563392 TGTTTTACTGCCTCAATTGTATCAG-TGTGAGTACATTCGAGAGTAACAGTTTTACCAGT 563450 ||| || ||||||||| || | | ||| ||| ||||||| ||||| ||||| Sbjct 5979 GCTTTGACATTCTCAATTGTGTCTGAAGCCTCTAC-TTCAAGAGTAATTGTTTTTCCAGT 6037 Query 563451 AAGAGTTTTAACGAAAATTTGCAT 563474 ||| || ||||| || || ||||| Sbjct 6038 AAGGGTCTTAACAAAGATCTGCAT 6061 >seq767 Length=35405 Score = 89.7 bits (98), Expect = 4e-12 Identities = 116/155 (75%), Gaps = 4/155 (3%) Strand=Plus/Minus Query 368914 ATTGATCAAACACGTGGTTGGTTTTATACCCTATTAGTATTATCCACAGCTATTTTCGAT 368973 ||||| ||||||||||||||||| |||||||| | || | || || ||| ||||| | Sbjct 28353 ATTGACCAAACACGTGGTTGGTTCTATACCCTTCTTGTTCTTTCGACGGCTCTTTTCAAC 28294 Query 368974 AAACCGGCTTTTAAAAATGTAATA-GTAACTGGTATTGTTAATGCATCTGATGG-TCAAA 369031 || | || |||||| | || |||| ||| || || ||| |||||||| ||||| Sbjct 28293 CGCCCTCCATTCAAAAATCTCATCTGTAA-TGGCCTTATTCTTGCTTCTGATGGCTCAAA 28235 Query 369032 AGATGTCAAAAAGTAAGGGTAATTATTCCGATCCT 369066 | ||||||||||| ||| |||||| | |||||| Sbjct 28234 A-ATGTCAAAAAGAAAGAAGAATTATCCAGATCCT 28201 >seq285 Length=50150 Score = 87.8 bits (96), Expect = 1e-11 Identities = 107/143 (75%), Gaps = 6/143 (4%) Strand=Plus/Minus Query 563335 CCGGCAAAAATAAGTCTTTGCTGATCAGGAGGAATTCCTTCTTTATCTTGAATTTTTTGT 563394 || |||||||| | || |||||||| |||||||| || || |||||||| |||||| Sbjct 46405 CCTGCAAAAATCAATCGCTGCTGATCGGGAGGAATACCCTCCTTATCTTGGATTTTTGCC 46346 Query 563395 TTTACTGCCTCAATTGTATCAGTGTGAG-TACA--TTCGAGAGTAACAGTTTTACCAGTA 563451 || || ||| || || || | || | || ||| ||||||| || |||||||| Sbjct 46345 TTCACGTTCTCTATAGTGTCCGA---AGCTTCAACTTCAAGAGTAATGGTCTTACCAGTC 46289 Query 563452 AGAGTTTTAACGAAAATTTGCAT 563474 | |||||| |||||||||||||| Sbjct 46288 AAAGTTTTCACGAAAATTTGCAT 46266 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 4028247194397680