Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Enterobius_20vermicularis_20[genbank_20GCA_5F000951215.1_202014-09- 25] 19,832 sequences; 150,050,672 total letters Query= NC_018504.1 Length=123876 Score E Sequences producing significant alignments: (Bits) Value seq2430 143 2e-29 seq285 118 8e-22 seq2949 107 2e-18 >seq2430 Length=18656 Score = 143 bits (158), Expect = 2e-29 Identities = 118/144 (82%), Gaps = 0/144 (0%) Strand=Plus/Plus Query 101326 CTTACCTGCAAATATCAAACGCTGTTGATCGGGCGGAATGCCTTCTTTATCTTGAATTTT 101385 |||||| ||||| ||||||||||||||||| || ||||| |||||||| || |||||||| Sbjct 5621 CTTACCAGCAAAAATCAAACGCTGTTGATCCGGAGGAATCCCTTCTTTGTCCTGAATTTT 5680 Query 101386 TTGTTTTACAATTTCTACAGTGTCAGACGTTTCCACTTCAAGAGTGACCGTTTTGCCGGT 101445 | ||| ||| |||| | |||||||||| || ||||||||||| | |||||||| || Sbjct 5681 TGCTTTGACATTTTCAATCGTGTCAGACGCCTCAACTTCAAGAGTTATGGTTTTGCCAGT 5740 Query 101446 TAAAGTTTTTACAAATATCTGCAT 101469 | ||||| ||||| |||||||| Sbjct 5741 AAGCGTTTTCACAAAAATCTGCAT 5764 Score = 132 bits (146), Expect = 4e-26 Identities = 117/146 (80%), Gaps = 0/146 (0%) Strand=Plus/Plus Query 101328 TACCTGCAAATATCAAACGCTGTTGATCGGGCGGAATGCCTTCTTTATCTTGAATTTTTT 101387 |||||||||| || | ||||||||||||||| ||||| ||||| ||||| ||||||||| Sbjct 6683 TACCTGCAAAAATAAGACGCTGTTGATCGGGTGGAATTCCTTCCTTATCCTGAATTTTTG 6742 Query 101388 GTTTTACAATTTCTACAGTGTCAGACGTTTCCACTTCAAGAGTGACCGTTTTGCCGGTTA 101447 ||| ||| | || | ||||| || | ||| ||||| | ||||| |||||||| || | Sbjct 6743 CTTTCACATTCTCAATTGTGTCGGAAGCTTCGACTTCCAAAGTGATTGTTTTGCCAGTAA 6802 Query 101448 AAGTTTTTACAAATATCTGCATGGTT 101473 |||||| ||||| || ||||||||| Sbjct 6803 GAGTTTTGACAAAGATTTGCATGGTT 6828 Score = 109 bits (120), Expect = 4e-19 Identities = 110/143 (77%), Gaps = 0/143 (0%) Strand=Plus/Plus Query 101327 TTACCTGCAAATATCAAACGCTGTTGATCGGGCGGAATGCCTTCTTTATCTTGAATTTTT 101386 ||||||||||| || | |||||| || |||||||| || ||||| ||||| ||||||||| Sbjct 6227 TTACCTGCAAAAATAAGACGCTGCTGGTCGGGCGGGATCCCTTCCTTATCCTGAATTTTT 6286 Query 101387 TGTTTTACAATTTCTACAGTGTCAGACGTTTCCACTTCAAGAGTGACCGTTTTGCCGGTT 101446 ||| || |||| | ||||| |||| ||| || ||||| |||| ||||| || || Sbjct 6287 GCTTTCACGTTTTCGATGGTGTCGGACGCTTCAACCTCAAGCGTGATGGTTTTACCCGTA 6346 Query 101447 AAAGTTTTTACAAATATCTGCAT 101469 | ||||| || || || ||||| Sbjct 6347 AGGGTTTTGACGAAAATTTGCAT 6369 Score = 102 bits (112), Expect = 6e-17 Identities = 110/146 (75%), Gaps = 0/146 (0%) Strand=Plus/Plus Query 101325 GCTTACCTGCAAATATCAAACGCTGTTGATCGGGCGGAATGCCTTCTTTATCTTGAATTT 101384 ||||||| || || || |||||||||||||| ||||| || || ||||| |||||||| | Sbjct 5008 GCTTACCAGCGAAAATTAAACGCTGTTGATCCGGCGGTATTCCCTCTTTGTCTTGAATCT 5067 Query 101385 TTTGTTTTACAATTTCTACAGTGTCAGACGTTTCCACTTCAAGAGTGACCGTTTTGCCGG 101444 | ||| ||| |||| | ||||| || | || |||||||| || | |||||| || | Sbjct 5068 TCGCTTTCACATTTTCAATGGTGTCCGAAGCCTCAACTTCAAGCGTTATCGTTTTCCCAG 5127 Query 101445 TTAAAGTTTTTACAAATATCTGCATG 101470 | | || || || || || |||||| Sbjct 5128 TAAGGGTCTTAACGAAAATTTGCATG 5153 Score = 93.3 bits (102), Expect = 3e-14 Identities = 107/144 (74%), Gaps = 0/144 (0%) Strand=Plus/Plus Query 101326 CTTACCTGCAAATATCAAACGCTGTTGATCGGGCGGAATGCCTTCTTTATCTTGAATTTT 101385 |||||| ||||| || || || |||||||| || ||||| || ||||| || || ||||| Sbjct 5918 CTTACCAGCAAAAATTAATCGTTGTTGATCTGGAGGAATTCCCTCTTTGTCCTGGATTTT 5977 Query 101386 TTGTTTTACAATTTCTACAGTGTCAGACGTTTCCACTTCAAGAGTGACCGTTTTGCCGGT 101445 ||| ||| | || | ||||| || | || ||||||||||| | ||||| || || Sbjct 5978 GGCTTTGACATTCTCAATTGTGTCTGAAGCCTCTACTTCAAGAGTAATTGTTTTTCCAGT 6037 Query 101446 TAAAGTTTTTACAAATATCTGCAT 101469 | || || ||||| |||||||| Sbjct 6038 AAGGGTCTTAACAAAGATCTGCAT 6061 >seq285 Length=50150 Score = 118 bits (130), Expect = 8e-22 Identities = 113/145 (78%), Gaps = 0/145 (0%) Strand=Plus/Minus Query 101325 GCTTACCTGCAAATATCAAACGCTGTTGATCGGGCGGAATGCCTTCTTTATCTTGAATTT 101384 ||| ||||||||| ||||| ||||| |||||||| ||||| || || |||||||| |||| Sbjct 46410 GCTAACCTGCAAAAATCAATCGCTGCTGATCGGGAGGAATACCCTCCTTATCTTGGATTT 46351 Query 101385 TTTGTTTTACAATTTCTACAGTGTCAGACGTTTCCACTTCAAGAGTGACCGTTTTGCCGG 101444 || || || | |||| |||||| || | ||| ||||||||||| | || || || | Sbjct 46350 TTGCCTTCACGTTCTCTATAGTGTCCGAAGCTTCAACTTCAAGAGTAATGGTCTTACCAG 46291 Query 101445 TTAAAGTTTTTACAAATATCTGCAT 101469 | |||||||| || || || ||||| Sbjct 46290 TCAAAGTTTTCACGAAAATTTGCAT 46266 >seq2949 Length=15852 Score = 107 bits (118), Expect = 2e-18 Identities = 109/142 (77%), Gaps = 0/142 (0%) Strand=Plus/Minus Query 101328 TACCTGCAAATATCAAACGCTGTTGATCGGGCGGAATGCCTTCTTTATCTTGAATTTTTT 101387 |||||||||| || |||||||| ||||| || || |||||||| || || ||||| || Sbjct 11472 TACCTGCAAAAATTAAACGCTGCTGATCCGGAGGGATGCCTTCCTTGTCCTGAATCTTCG 11413 Query 101388 GTTTTACAATTTCTACAGTGTCAGACGTTTCCACTTCAAGAGTGACCGTTTTGCCGGTTA 101447 ||| ||| |||| | ||||| || | ||||| || | |||| |||||||| || | Sbjct 11412 CTTTCACATTTTCAATTGTGTCCGAAGCCTCCACCTCTAAGGTGATTGTTTTGCCAGTAA 11353 Query 101448 AAGTTTTTACAAATATCTGCAT 101469 ||||||||||| |||||||| Sbjct 11352 GGGTTTTTACAAAAATCTGCAT 11331 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 396182618520024