Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Enterobius_20vermicularis_20[genbank_20GCA_5F000951215.1_202014-09- 25] 19,832 sequences; 150,050,672 total letters Query= NC_020104.1 Length=1021348 Score E Sequences producing significant alignments: (Bits) Value seq328 156 3e-32 seq2430 118 7e-21 seq267 105 4e-17 seq1516 104 2e-16 seq1143 89.7 3e-12 >seq328 Length=47871 Score = 156 bits (172), Expect = 3e-32 Identities = 176/236 (75%), Gaps = 0/236 (0%) Strand=Plus/Minus Query 474641 GAAACTAAACAATTTTCACCGGAACAAATTTCTTCAATGGTTTTAGCCAAAATGAAACAA 474700 || || ||| |||| | || ||| |||||||| | |||||||| | |||||||| | Sbjct 29504 GACACGAAAACATTTGCTCCTGAAGAAATTTCTGCTATGGTTTTGGGAAAAATGAAGGAG 29445 Query 474701 ACCGCGAGCTCATATCTTGGACAAGAAGTAACTGATGCAGTAATTACTGTTCCAGCATAT 474760 | ||| || |||||||| |||| | | |||| || | ||||| ||||| || Sbjct 29444 ATTGCGGAGTCGTATCTTGGTAAAGAGATCAAACATGCGGTCGTCACTGTACCAGCTTAC 29385 Query 474761 TTTAATGATTCTCAACGTCAAGCAACTAAAGATGCGGGAAGAATTGCAGGTCTTAATGTT 474820 || |||||| | || | ||||| || |||||||| || | ||||| ||||||||||| Sbjct 29384 TTCAATGATGCACAGAGGCAAGCGACAAAAGATGCTGGCACTATTGCTGGTCTTAATGTA 29325 Query 474821 TTACGTATTATTAATGAACCAACAGCAGCCGCACTTGCTTATGGTCTTGATAAGAA 474876 | |||||||| |||||||||||||| || || |||||||||| || |||||||| Sbjct 29324 GTGCGTATTATCAATGAACCAACAGCGGCAGCTATTGCTTATGGCCTGGATAAGAA 29269 Score = 96.9 bits (106), Expect = 2e-14 Identities = 163/234 (70%), Gaps = 8/234 (3%) Strand=Plus/Minus Query 475793 AATCCTGATGAAGCTGTTGCATATGGAGCTGCTGTCCAAGCAGCTATTTTATCAGGTCAA 475852 |||||||||||||||||||||||||| ||||| || || || | | | | || || Sbjct 28329 AATCCTGATGAAGCTGTTGCATATGGTGCTGCCGTACAGGCTGGTGTGATTTCTGG---- 28274 Query 475853 TCAGACGAGAAACTAAATAATATTGTACTTGTTGACGTAACTCCACTTTCATTAGGTCTT 475912 ||| || ||| |||| |||| || ||| ||||||||| ||| | | | || || Sbjct 28273 --AGAAGAAAAAGCAAATGATATCGTGCTTCTTGACGTAAATCCGTTGACGCTTGGCATT 28216 Query 475913 GAAACAGTTGGAGGGATTATGACTAATCTTATTGACAGAAATACTCCTA-TCCCATGCAA 475971 ||||||||||| || | ||||| || || ||| || | ||||| || ||| | | | Sbjct 28215 GAAACAGTTGGTGGAGTAATGACCAAACTGATTAACCGTAATACCGTTATTCCGACGAAG 28156 Query 475972 AAAATCAAAAGTATTTTCCACTTATTCTGATAATCAAACAACTGTAACCATCCA 476025 || | | ||| |||| || ||| | ||||| || | ||||| || || || Sbjct 28155 AAGAGCCAAA-TATTCTCAACTGCAGCAGATAACCAGCCCACTGTGACGATTCA 28103 Score = 95.1 bits (104), Expect = 8e-14 Identities = 135/189 (71%), Gaps = 6/189 (3%) Strand=Plus/Minus Query 474355 TTACAGTTGTGTAGCTGTTTGGCAAAATGGTAAAGTAGAAATAATTGCCAATGACCAAGG 474414 || ||||||||| | ||||| | ||||| ||| |||||||||||||| || ||||| Sbjct 29895 TTCCAGTTGTGTCGGTGTTTATAAGAATGGACGAGTTGAAATAATTGCCAACGATCAAGG 29836 Query 474415 TAATAGAACAACACCATCATATGTTTCTTT---TACTGAAACT---GAACATCTTATTGG 474468 || | | || |||||||||||| | || || ||| || |||| | | ||||| Sbjct 29835 CAACCGTATTACTCCATCATATGTTGCATTCACTAGTGATTCTGGAGAACGTTTAATTGG 29776 Query 474469 AGATGCTGCTAAATATCAAGCTGCATCTAATCCTGTTAATACTATTTTTGATGCTAAAAG 474528 ||||| || ||| |||| | | |||||| | || || |||||||||| ||| | Sbjct 29775 TGATGCAGCCAAAAATCAGCTTACTATTAATCCAGAAAACACCGTTTTTGATGCGAAACG 29716 Query 474529 ATTGATTGG 474537 |||||||| Sbjct 29715 TTTGATTGG 29707 Score = 89.7 bits (98), Expect = 3e-12 Identities = 75/92 (82%), Gaps = 0/92 (0%) Strand=Plus/Minus Query 476090 GGTATTCCTCCTGCTCCCAGAGGAGTTCCTCAAATTGAAGTTACTTTTGATATTGATGCA 476149 ||||||||||| || || ||||| |||||||||||||| || || ||||| || || | Sbjct 27952 GGTATTCCTCCAGCACCAAGAGGTGTTCCTCAAATTGAGGTGACATTTGAAATAGACGTC 27893 Query 476150 AATGGTATTCTTAATGTTACTGCTTGTGATAA 476181 |||||||||||| | ||||||||| ||||| Sbjct 27892 AATGGTATTCTTCACGTTACTGCTGAGGATAA 27861 >seq2430 Length=18656 Score = 118 bits (130), Expect = 7e-21 Identities = 113/142 (80%), Gaps = 2/142 (1%) Strand=Plus/Plus Query 480629 CTTTCCAGCAAAAATAAGACGTTGTTGATCAGGAGGAATTCCTTCCTTGTCTTGAATCTT 480688 ||| ||||| ||||| | |||||||||||| |||||||| ||||||||||| |||||||| Sbjct 5324 CTTACCAGCGAAAATTAAACGTTGTTGATCCGGAGGAATCCCTTCCTTGTCCTGAATCTT 5383 Query 480689 TTGTTTGACAGCTTCAATAGTATCAG-TGTGTGAAGTTTCAAGGGTAATAGTTTTACCGG 480747 ||| ||| ||||| ||||||| | | || ||| || || |||||||| |||| Sbjct 5384 CGCTTTAACATTCTCAATCGTATCAGACGCCTCAA-CTTCGAGCGTTATAGTTTTCCCGG 5442 Query 480748 TGAGAGTCTTAACGAAAATTTG 480769 | ||||| ||||||||||| || Sbjct 5443 TAAGAGTTTTAACGAAAATCTG 5464 Score = 104 bits (114), Expect = 2e-16 Identities = 114/149 (77%), Gaps = 2/149 (1%) Strand=Plus/Plus Query 480622 CAAGTTGCTTTCCAGCAAAAATAAGACGTTGTTGATCAGGAGGAATTCCTTCCTTGTCTT 480681 |||| |||| ||||| ||||| | ||| |||||||| || || ||||| || ||||||| Sbjct 5002 CAAGAAGCTTACCAGCGAAAATTAAACGCTGTTGATCCGGCGGTATTCCCTCTTTGTCTT 5061 Query 480682 GAATCTTTTGTTTGACAGCTTCAATAGTATCAG-TGTGTGAAGTTTCAAGGGTAATAGTT 480740 ||||||| ||| ||| |||||| || || | | | || |||||| || || ||| Sbjct 5062 GAATCTTCGCTTTCACATTTTCAATGGTGTCCGAAGCCTCAA-CTTCAAGCGTTATCGTT 5120 Query 480741 TTACCGGTGAGAGTCTTAACGAAAATTTG 480769 || || || || ||||||||||||||||| Sbjct 5121 TTCCCAGTAAGGGTCTTAACGAAAATTTG 5149 Score = 100 bits (110), Expect = 2e-15 Identities = 109/142 (77%), Gaps = 2/142 (1%) Strand=Plus/Plus Query 480629 CTTTCCAGCAAAAATAAGACGTTGTTGATCAGGAGGAATTCCTTCCTTGTCTTGAATCTT 480688 ||| ||||||||||| | ||| |||||||| |||||||| ||||| ||||| ||||| || Sbjct 5621 CTTACCAGCAAAAATCAAACGCTGTTGATCCGGAGGAATCCCTTCTTTGTCCTGAATTTT 5680 Query 480689 TTGTTTGACAGCTTCAATAGTATCAG-TGTGTGAAGTTTCAAGGGTAATAGTTTTACCGG 480747 | ||||||| |||||| || |||| | | || |||||| || || ||||| || | Sbjct 5681 TGCTTTGACATTTTCAATCGTGTCAGACGCCTCAA-CTTCAAGAGTTATGGTTTTGCCAG 5739 Query 480748 TGAGAGTCTTAACGAAAATTTG 480769 | || || || || ||||| || Sbjct 5740 TAAGCGTTTTCACAAAAATCTG 5761 Score = 87.8 bits (96), Expect = 1e-11 Identities = 106/142 (75%), Gaps = 2/142 (1%) Strand=Plus/Plus Query 480629 CTTTCCAGCAAAAATAAGACGTTGTTGATCAGGAGGAATTCCTTCCTTGTCTTGAATCTT 480688 ||| ||||||||||| | ||||||||||| ||||||||||| || ||||| || || || Sbjct 5918 CTTACCAGCAAAAATTAATCGTTGTTGATCTGGAGGAATTCCCTCTTTGTCCTGGATTTT 5977 Query 480689 TTGTTTGACAGCTTCAATAGTATCAG-TGTGTGAAGTTTCAAGGGTAATAGTTTTACCGG 480747 ||||||| ||||| || || | | | | |||||| ||||| ||||| || | Sbjct 5978 GGCTTTGACATTCTCAATTGTGTCTGAAGCCTCTA-CTTCAAGAGTAATTGTTTTTCCAG 6036 Query 480748 TGAGAGTCTTAACGAAAATTTG 480769 | || |||||||| || || || Sbjct 6037 TAAGGGTCTTAACAAAGATCTG 6058 >seq267 Length=51418 Score = 105 bits (116), Expect = 4e-17 Identities = 103/133 (77%), Gaps = 0/133 (0%) Strand=Plus/Minus Query 474744 TTACTGTTCCAGCATATTTTAATGATTCTCAACGTCAAGCAACTAAAGATGCGGGAAGAA 474803 ||||||| ||||||||||| ||||| || || ||||| || || |||||||| || || Sbjct 29401 TTACTGTGCCAGCATATTTCAATGACTCACAGCGTCAGGCTACAAAAGATGCAGGTGCAA 29342 Query 474804 TTGCAGGTCTTAATGTTTTACGTATTATTAATGAACCAACAGCAGCCGCACTTGCTTATG 474863 ||||||| | || ||| | || || || |||||||| ||||| || || |||| |||| Sbjct 29341 TTGCAGGATTAAACGTTCTTCGAATCATCAATGAACCTACAGCTGCAGCTATTGCGTATG 29282 Query 474864 GTCTTGATAAGAA 474876 | || ||||| || Sbjct 29281 GGCTGGATAAAAA 29269 >seq1516 Length=25419 Score = 104 bits (114), Expect = 2e-16 Identities = 319/488 (65%), Gaps = 4/488 (1%) Strand=Plus/Plus Query 475805 GCTGTTGCATATGGAGCTGCTGTCCAAGCAGCTATTTTATCAGGTCAATCAGAC-GAGAA 475863 ||||| || ||||| || || || ||||||||||| | || || | || | |||| Sbjct 7438 GCTGTGGCTTATGGCGCAGCAGTTCAAGCAGCTATCCTTTCTGGAGACA-AGTCTGAGAC 7496 Query 475864 ACTAAATAATATTGTACTTGTTGACGTAACTCCACTTTCATTAGGTCTTGAAACAGTTGG 475923 || | || | | || |||| ||| |||| ||||| || ||| ||||||| | ||| Sbjct 7497 CGTACAAGATCTGCTTCTGCTTGATGTAGCTCCGCTTTCTTTGGGTATTGAAACTGCTGG 7556 Query 475924 AGGGATTATGACTAATCTTATTGACAGAAATACTCCTATCCCATGCAAAAAATCAAAAGT 475983 || | ||||| | | || | || || || | |||||| |||| || | Sbjct 7557 CGGAGTGATGACGTCTTTGATCAAGAGGAACACAACAATCCCAACGAAAACTTCTCAGAC 7616 Query 475984 ATTTTCCACTTATTCTGATAATCAAACAACTGTAACCATCCAAATCTTTGAAGGTGAAAG 476043 |||| | || || ||||| || || | || || || | | || |||||| | Sbjct 7617 ATTTACTACATACTCTGACAACCAGCCTGGAGTGTTGATTCAGGTTTACGAGGGTGAACG 7676 Query 476044 AAAATTCACTAAAGATAATAACAAACTTGG-AACTTTTAATCTTGAAGGTATTCCTCCTG 476102 | || || |||||||| ||||| || || ||| | ||||| || || | Sbjct 7677 TGCTATGACAAAGGATAATAATCTTCTTGGCAAGTTCGAATTATCC-GGTATCCCACCAG 7735 Query 476103 CTCCCAGAGGAGTTCCTCAAATTGAAGTTACTTTTGATATTGATGCAAATGGTATTCTTA 476162 |||| || || || || || || |||||||| |||||||||||||| ||||| || | | Sbjct 7736 CTCCGAGGGGTGTACCGCAGATAGAAGTTACGTTTGATATTGATGCCAATGGCATCTTGA 7795 Query 476163 ATGTTACTGCTTGTGATAAATCTAGTAACAAGAGTAAAAATATAACTATTACAAACAATC 476222 |||||||||| || || || | | ||| ||| || ||||| |||||||| | Sbjct 7796 ATGTTACTGCACAGGACAAGTCGACTGGCAAACATAACAAGATAACGATTACAAATGACA 7855 Query 476223 GTGGTAGATTTACTGAAGAACAAATTCAACGTATGGTTGATGAAGCCAAAGAGTTTGAAG 476282 ||| | || || | || ||||| | || |||||| | || ||| | ||| | | | Sbjct 7856 AGGGTCGCCTTTCTAAGGATGAAATTGATCGGATGGTTCAAGAGGCCGAGAAGTATAAGG 7915 Query 476283 AAGCTGAT 476290 || |||| Sbjct 7916 CAGATGAT 7923 >seq1143 Length=29297 Score = 89.7 bits (98), Expect = 3e-12 Identities = 73/89 (82%), Gaps = 0/89 (0%) Strand=Plus/Plus Query 476090 GGTATTCCTCCTGCTCCCAGAGGAGTTCCTCAAATTGAAGTTACTTTTGATATTGATGCA 476149 ||||||||||| || || | || |||||||| ||||||||||| ||||||||||||||| Sbjct 22804 GGTATTCCTCCAGCACCGCGTGGTGTTCCTCAGATTGAAGTTACATTTGATATTGATGCA 22863 Query 476150 AATGGTATTCTTAATGTTACTGCTTGTGA 476178 || |||||| | || || | ||| |||| Sbjct 22864 AACGGTATTGTAAACGTCAGTGCACGTGA 22892 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 3267328509295136