Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Enterobius_20vermicularis_20[genbank_20GCA_5F000951215.1_202014-09- 25] 19,832 sequences; 150,050,672 total letters Query= NC_021246.1 Length=281182 Score E Sequences producing significant alignments: (Bits) Value seq2430 116 7e-21 seq2949 100 5e-16 seq285 100 5e-16 >seq2430 Length=18656 Score = 116 bits (128), Expect = 7e-21 Identities = 112/144 (78%), Gaps = 0/144 (0%) Strand=Plus/Plus Query 193218 TTTCCGGCAAAAATTAATCTCTGTTGATCAGGAGGTATTCCTTCTTTATCTTGTATTTTG 193277 || || ||||||||||||| |||||||| ||||| ||||| ||||| || || |||||| Sbjct 5919 TTACCAGCAAAAATTAATCGTTGTTGATCTGGAGGAATTCCCTCTTTGTCCTGGATTTTG 5978 Query 193278 GTTTTTATATTTAAAATAGTATCGGAAGACTCAACTTCTAGAGTTATAGTTTTACCTGTT 193337 | ||| | ||| ||| || || |||| ||| ||||| ||||| || ||||| || || Sbjct 5979 GCTTTGACATTCTCAATTGTGTCTGAAGCCTCTACTTCAAGAGTAATTGTTTTTCCAGTA 6038 Query 193338 AGCGTTTTTACAAATATTTGCATT 193361 || || || ||||| || |||||| Sbjct 6039 AGGGTCTTAACAAAGATCTGCATT 6062 Score = 100 bits (110), Expect = 5e-16 Identities = 108/143 (76%), Gaps = 0/143 (0%) Strand=Plus/Plus Query 193218 TTTCCGGCAAAAATTAATCTCTGTTGATCAGGAGGTATTCCTTCTTTATCTTGTATTTTG 193277 || || || |||||||| | |||||||| ||||| || ||||| || || || || || Sbjct 5325 TTACCAGCGAAAATTAAACGTTGTTGATCCGGAGGAATCCCTTCCTTGTCCTGAATCTTC 5384 Query 193278 GTTTTTATATTTAAAATAGTATCGGAAGACTCAACTTCTAGAGTTATAGTTTTACCTGTT 193337 | ||| | ||| ||| ||||| || | ||||||||| || ||||||||||| || || Sbjct 5385 GCTTTAACATTCTCAATCGTATCAGACGCCTCAACTTCGAGCGTTATAGTTTTCCCGGTA 5444 Query 193338 AGCGTTTTTACAAATATTTGCAT 193360 || ||||| || || || ||||| Sbjct 5445 AGAGTTTTAACGAAAATCTGCAT 5467 >seq2949 Length=15852 Score = 100 bits (110), Expect = 5e-16 Identities = 108/143 (76%), Gaps = 0/143 (0%) Strand=Plus/Minus Query 193221 CCGGCAAAAATTAATCTCTGTTGATCAGGAGGTATTCCTTCTTTATCTTGTATTTTGGTT 193280 || ||||||||||| | ||| ||||| ||||| || ||||| || || || || || | | Sbjct 11470 CCTGCAAAAATTAAACGCTGCTGATCCGGAGGGATGCCTTCCTTGTCCTGAATCTTCGCT 11411 Query 193281 TTTATATTTAAAATAGTATCGGAAGACTCAACTTCTAGAGTTATAGTTTTACCTGTTAGC 193340 || | |||| ||| || || |||| ||| || |||| || || ||||| || || || Sbjct 11410 TTCACATTTTCAATTGTGTCCGAAGCCTCCACCTCTAAGGTGATTGTTTTGCCAGTAAGG 11351 Query 193341 GTTTTTACAAATATTTGCATTTT 193363 ||||||||||| || ||||| || Sbjct 11350 GTTTTTACAAAAATCTGCATCTT 11328 >seq285 Length=50150 Score = 100 bits (110), Expect = 5e-16 Identities = 108/143 (76%), Gaps = 0/143 (0%) Strand=Plus/Minus Query 193221 CCGGCAAAAATTAATCTCTGTTGATCAGGAGGTATTCCTTCTTTATCTTGTATTTTGGTT 193280 || |||||||| |||| ||| ||||| ||||| || || || |||||||| ||||| | Sbjct 46405 CCTGCAAAAATCAATCGCTGCTGATCGGGAGGAATACCCTCCTTATCTTGGATTTTTGCC 46346 Query 193281 TTTATATTTAAAATAGTATCGGAAGACTCAACTTCTAGAGTTATAGTTTTACCTGTTAGC 193340 || | || ||||| || |||| |||||||| ||||| || || ||||| || | Sbjct 46345 TTCACGTTCTCTATAGTGTCCGAAGCTTCAACTTCAAGAGTAATGGTCTTACCAGTCAAA 46286 Query 193341 GTTTTTACAAATATTTGCATTTT 193363 ||||| || || ||||||||||| Sbjct 46285 GTTTTCACGAAAATTTGCATTTT 46263 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 899431375674240