Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Enterobius_20vermicularis_20[genbank_20GCA_5F000951215.1_202014-09- 25] 19,832 sequences; 150,050,672 total letters Query= NC_021923.1 Length=140633 Score E Sequences producing significant alignments: (Bits) Value seq2430 114 1e-20 seq285 89.7 5e-13 >seq2430 Length=18656 Score = 114 bits (126), Expect = 1e-20 Identities = 111/143 (78%), Gaps = 0/143 (0%) Strand=Plus/Minus Query 24704 ATGCAGATCTTTATTAAAACGCTAACCGGTAAAACTATTACGCTCGAAGTAGAAGCCACC 24763 |||||||||||| |||| || || || || ||||| ||||| || |||||||| || | Sbjct 6061 ATGCAGATCTTTGTTAAGACCCTTACTGGAAAAACAATTACTCTTGAAGTAGAGGCTTCA 6002 Query 24764 GACACAGTAGAAACGGTAAAACAAAAGATCCAAGACAAAGAAGGAATACCTCCCGATCAA 24823 |||||| | || | || ||| || ||||| |||||||| ||||| ||||| |||||| Sbjct 6001 GACACAATTGAGAATGTCAAAGCCAAAATCCAGGACAAAGAGGGAATTCCTCCAGATCAA 5942 Query 24824 CAACGTTTGATCTTTGCCGGGAA 24846 ||||| || || ||||| || || Sbjct 5941 CAACGATTAATTTTTGCTGGTAA 5919 Score = 109 bits (120), Expect = 5e-19 Identities = 110/143 (77%), Gaps = 0/143 (0%) Strand=Plus/Minus Query 24704 ATGCAGATCTTTATTAAAACGCTAACCGGTAAAACTATTACGCTCGAAGTAGAAGCCACC 24763 |||||||| ||| | |||||||| || || ||||| || || || ||||| || || | Sbjct 5764 ATGCAGATTTTTGTGAAAACGCTTACTGGCAAAACCATAACTCTTGAAGTTGAGGCGTCT 5705 Query 24764 GACACAGTAGAAACGGTAAAACAAAAGATCCAAGACAAAGAAGGAATACCTCCCGATCAA 24823 ||||| | |||| || ||| ||| || || ||||||||||| || ||||| |||||| Sbjct 5704 GACACGATTGAAAATGTCAAAGCAAAAATTCAGGACAAAGAAGGGATTCCTCCGGATCAA 5645 Query 24824 CAACGTTTGATCTTTGCCGGGAA 24846 || |||||||| ||||| || || Sbjct 5644 CAGCGTTTGATTTTTGCTGGTAA 5622 Score = 107 bits (118), Expect = 2e-18 Identities = 110/144 (76%), Gaps = 0/144 (0%) Strand=Plus/Minus Query 24703 GATGCAGATCTTTATTAAAACGCTAACCGGTAAAACTATTACGCTCGAAGTAGAAGCCAC 24762 ||||||||| || ||||||| || ||||| |||||||| ||||||||||| || || | Sbjct 5468 GATGCAGATTTTCGTTAAAACTCTTACCGGGAAAACTATAACGCTCGAAGTTGAGGCGTC 5409 Query 24763 CGACACAGTAGAAACGGTAAAACAAAAGATCCAAGACAAAGAAGGAATACCTCCCGATCA 24822 || || | || | || ||| ||||| || ||||| ||||| || ||||| ||||| Sbjct 5408 TGATACGATTGAGAATGTTAAAGCGAAGATTCAGGACAAGGAAGGGATTCCTCCGGATCA 5349 Query 24823 ACAACGTTTGATCTTTGCCGGGAA 24846 ||||||||| || || || || || Sbjct 5348 ACAACGTTTAATTTTCGCTGGTAA 5325 Score = 96.9 bits (106), Expect = 3e-15 Identities = 107/143 (75%), Gaps = 0/143 (0%) Strand=Plus/Minus Query 24704 ATGCAGATCTTTATTAAAACGCTAACCGGTAAAACTATTACGCTCGAAGTAGAAGCCACC 24763 ||||| || || |||| || || || || ||||| || ||||| ||||| || || | Sbjct 5152 ATGCAAATTTTCGTTAAGACCCTTACTGGGAAAACGATAACGCTTGAAGTTGAGGCTTCG 5093 Query 24764 GACACAGTAGAAACGGTAAAACAAAAGATCCAAGACAAAGAAGGAATACCTCCCGATCAA 24823 ||||| | |||| || ||| ||||| ||||||||||| |||||||| || |||||| Sbjct 5092 GACACCATTGAAAATGTGAAAGCGAAGATTCAAGACAAAGAGGGAATACCGCCGGATCAA 5033 Query 24824 CAACGTTTGATCTTTGCCGGGAA 24846 || ||||| || || || || || Sbjct 5032 CAGCGTTTAATTTTCGCTGGTAA 5010 Score = 96.9 bits (106), Expect = 3e-15 Identities = 107/143 (75%), Gaps = 0/143 (0%) Strand=Plus/Minus Query 24701 ACGATGCAGATCTTTATTAAAACGCTAACCGGTAAAACTATTACGCTCGAAGTAGAAGCC 24760 || ||||| |||||| | ||||| || || || ||||| || || | ||||| ||||| Sbjct 6827 ACCATGCAAATCTTTGTCAAAACTCTTACTGGCAAAACAATCACTTTGGAAGTCGAAGCT 6768 Query 24761 ACCGACACAGTAGAAACGGTAAAACAAAAGATCCAAGACAAAGAAGGAATACCTCCCGAT 24820 |||||||| | || | || ||| ||| || || || || |||||||| || |||||| Sbjct 6767 TCCGACACAATTGAGAATGTGAAAGCAAAAATTCAGGATAAGGAAGGAATTCCACCCGAT 6708 Query 24821 CAACAACGTTTGATCTTTGCCGG 24843 ||||| ||| | || ||||| || Sbjct 6707 CAACAGCGTCTTATTTTTGCAGG 6685 >seq285 Length=50150 Score = 89.7 bits (98), Expect = 5e-13 Identities = 106/141 (75%), Gaps = 2/141 (1%) Strand=Plus/Plus Query 24704 ATGCAGATCTTTATTAAAACGCTAACCGGTAAAACTATTACGCTCGAAGTAGAAGCCACC 24763 ||||| || || | ||||| | || ||||| || ||||| || ||||| ||||| | Sbjct 46266 ATGCAAATTTTCGTGAAAACTTTGACTGGTAAGACCATTACTCTTGAAGTTGAAGCTTCG 46325 Query 24764 GACACAGTAGA-AACGGTAAAACAAAAGATCCAAGACAAAGAAGGAATACCTCCCGATCA 24822 ||||| |||| |||| || ||||| |||||||| || || || || ||||||||||| Sbjct 46326 GACACTATAGAGAACGTGAAGGCAAAA-ATCCAAGATAAGGAGGGTATTCCTCCCGATCA 46384 Query 24823 ACAACGTTTGATCTTTGCCGG 24843 || || ||||| ||||| || Sbjct 46385 GCAGCGATTGATTTTTGCAGG 46405 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 449786070384960