Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Enterobius_20vermicularis_20[genbank_20GCA_5F000951215.1_202014-09- 25] 19,832 sequences; 150,050,672 total letters Query= NC_027923.1 Length=132831 Score E Sequences producing significant alignments: (Bits) Value seq2833 95.1 1e-14 seq2430 91.5 1e-13 seq285 87.8 2e-12 >seq2833 Length=16420 Score = 95.1 bits (104), Expect = 1e-14 Identities = 121/167 (72%), Gaps = 0/167 (0%) Strand=Plus/Minus Query 131615 GGACACATTAGCGACCACACGCCGTTCTGTTCAACTCGCTTCATAAACAAATCCGGCACC 131674 || ||||| || ||||| | |||||| |||||||||| ||| |||||||| || | | Sbjct 2082 GGGCACATAAGTGACCAAATTTCGTTCTTTTCAACTCGCCGCATGAACAAATCAGGAATC 2023 Query 131675 CATAACGCGTACAACAGATCTCTAGCTTTTTTCTCTTCTGTACCCATAAtttttttCAAA 131734 ||||| || | || | ||| |||||| | || || | |||| | ||||| |||| Sbjct 2022 CATAAAGCAAAAAATAAATCCCTAGCTCGCTCTTCCTCACTGCCCACATTTTTTCTCAAT 1963 Query 131735 TTTAAAAAGTCCAAAATGTCCGCATGCCAGGGTTCCAAATACACTGC 131781 | | | | || || ||||| | |||||| ||||||||||| || || Sbjct 1962 TCCAGATAATCAAATATGTCTGAATGCCACGGTTCCAAATAAACAGC 1916 >seq2430 Length=18656 Score = 91.5 bits (100), Expect = 1e-13 Identities = 106/143 (74%), Gaps = 0/143 (0%) Strand=Plus/Plus Query 27105 TTACCGGCGTAAATGAGACGCTGTTGATCCGGCGGCACACCCTCTTTATCGGCGATCTTG 27164 ||||| ||| |||| | |||||||||||||||||| | |||||||| || ||||| Sbjct 5010 TTACCAGCGAAAATTAAACGCTGTTGATCCGGCGGTATTCCCTCTTTGTCTTGAATCTTC 5069 Query 27165 TTTTTCAGGGTTTCTACAGTGTCTGTGGCTTCAACTTCTAGAGTTATAGATTTGCCCGTC 27224 ||||| |||| | ||||| | || |||||||| || ||||| | ||| || || Sbjct 5070 GCTTTCACATTTTCAATGGTGTCCGAAGCCTCAACTTCAAGCGTTATCGTTTTCCCAGTA 5129 Query 27225 AGAGTTTTCACAAAGATTTGCAT 27247 || || || || || |||||||| Sbjct 5130 AGGGTCTTAACGAAAATTTGCAT 5152 Score = 87.8 bits (96), Expect = 2e-12 Identities = 105/143 (73%), Gaps = 0/143 (0%) Strand=Plus/Plus Query 27105 TTACCGGCGTAAATGAGACGCTGTTGATCCGGCGGCACACCCTCTTTATCGGCGATCTTG 27164 ||||| || |||| | ||||||||||||||| || | || ||||| || || || Sbjct 5622 TTACCAGCAAAAATCAAACGCTGTTGATCCGGAGGAATCCCTTCTTTGTCCTGAATTTTT 5681 Query 27165 TTTTTCAGGGTTTCTACAGTGTCTGTGGCTTCAACTTCTAGAGTTATAGATTTGCCCGTC 27224 ||| | |||| | ||||| | || |||||||| |||||||| | |||||| || Sbjct 5682 GCTTTGACATTTTCAATCGTGTCAGACGCCTCAACTTCAAGAGTTATGGTTTTGCCAGTA 5741 Query 27225 AGAGTTTTCACAAAGATTTGCAT 27247 || ||||||||||| || ||||| Sbjct 5742 AGCGTTTTCACAAAAATCTGCAT 5764 Score = 86.0 bits (94), Expect = 5e-12 Identities = 108/147 (73%), Gaps = 1/147 (1%) Strand=Plus/Plus Query 27102 TGTT-TACCGGCGTAAATGAGACGCTGTTGATCCGGCGGCACACCCTCTTTATCGGCGAT 27160 |||| |||| || |||| |||||||||||||| || || | || || ||||| || Sbjct 6678 TGTTATACCTGCAAAAATAAGACGCTGTTGATCGGGTGGAATTCCTTCCTTATCCTGAAT 6737 Query 27161 CTTGTTTTTCAGGGTTTCTACAGTGTCTGTGGCTTCAACTTCTAGAGTTATAGATTTGCC 27220 || ||||| | || | ||||| | ||||| ||||| | ||| || | |||||| Sbjct 6738 TTTTGCTTTCACATTCTCAATTGTGTCGGAAGCTTCGACTTCCAAAGTGATTGTTTTGCC 6797 Query 27221 CGTCAGAGTTTTCACAAAGATTTGCAT 27247 || |||||||| |||||||||||||| Sbjct 6798 AGTAAGAGTTTTGACAAAGATTTGCAT 6824 >seq285 Length=50150 Score = 87.8 bits (96), Expect = 2e-12 Identities = 104/141 (74%), Gaps = 0/141 (0%) Strand=Plus/Minus Query 27107 ACCGGCGTAAATGAGACGCTGTTGATCCGGCGGCACACCCTCTTTATCGGCGATCTTGTT 27166 ||| || |||| | ||||| ||||| || || | |||||| ||||| ||| || Sbjct 46406 ACCTGCAAAAATCAATCGCTGCTGATCGGGAGGAATACCCTCCTTATCTTGGATTTTTGC 46347 Query 27167 TTTCAGGGTTTCTACAGTGTCTGTGGCTTCAACTTCTAGAGTTATAGATTTGCCCGTCAG 27226 |||| | | |||| |||||| | ||||||||||| ||||| || | || || |||| Sbjct 46346 CTTCACGTTCTCTATAGTGTCCGAAGCTTCAACTTCAAGAGTAATGGTCTTACCAGTCAA 46287 Query 27227 AGTTTTCACAAAGATTTGCAT 27247 ||||||||| || |||||||| Sbjct 46286 AGTTTTCACGAAAATTTGCAT 46266 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 424831692293184