Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Enterobius_20vermicularis_20[genbank_20GCA_5F000951215.1_202014-09- 25] 19,832 sequences; 150,050,672 total letters Query= NC_028112.1 Length=178262 Score E Sequences producing significant alignments: (Bits) Value seq2430 131 2e-25 seq2949 107 2e-18 seq285 96.9 4e-15 >seq2430 Length=18656 Score = 131 bits (144), Expect = 2e-25 Identities = 116/145 (80%), Gaps = 0/145 (0%) Strand=Plus/Minus Query 27405 AATGCAAATCTTTGTCAAGACGCTTACCGGCAAGACTATTACTCTTGAGGTTGAGTCAGG 27464 |||||| || ||||| || |||||||| ||||| || || |||||||| |||||| | Sbjct 5765 AATGCAGATTTTTGTGAAAACGCTTACTGGCAAAACCATAACTCTTGAAGTTGAGGCGTC 5706 Query 27465 TGATAGCATTGCAAATTTGAAGGCTAAAATTCAGGACAAGGAGGGAATTCCTCCAGACCA 27524 ||| | |||| |||| | || || |||||||||||||| || || |||||||| || || Sbjct 5705 TGACACGATTGAAAATGTCAAAGCAAAAATTCAGGACAAAGAAGGGATTCCTCCGGATCA 5646 Query 27525 GCAGCGTCTAATTTTTGCTGGTAAG 27549 |||||| | ||||||||||||||| Sbjct 5645 ACAGCGTTTGATTTTTGCTGGTAAG 5621 Score = 127 bits (140), Expect = 2e-24 Identities = 115/145 (79%), Gaps = 0/145 (0%) Strand=Plus/Minus Query 27405 AATGCAAATCTTTGTCAAGACGCTTACCGGCAAGACTATTACTCTTGAGGTTGAGTCAGG 27464 |||||| |||||||| ||||| ||||| || || || ||||||||||| || ||| | Sbjct 6062 AATGCAGATCTTTGTTAAGACCCTTACTGGAAAAACAATTACTCTTGAAGTAGAGGCTTC 6003 Query 27465 TGATAGCATTGCAAATTTGAAGGCTAAAATTCAGGACAAGGAGGGAATTCCTCCAGACCA 27524 || | |||| ||| | || || ||||| |||||||| ||||||||||||||||| || Sbjct 6002 AGACACAATTGAGAATGTCAAAGCCAAAATCCAGGACAAAGAGGGAATTCCTCCAGATCA 5943 Query 27525 GCAGCGTCTAATTTTTGCTGGTAAG 27549 || || ||||||||||||||||| Sbjct 5942 ACAACGATTAATTTTTGCTGGTAAG 5918 Score = 116 bits (128), Expect = 4e-21 Identities = 112/144 (78%), Gaps = 0/144 (0%) Strand=Plus/Minus Query 27405 AATGCAAATCTTTGTCAAGACGCTTACCGGCAAGACTATTACTCTTGAGGTTGAGTCAGG 27464 ||||||||| || ||||| || ||||| || || || || || ||||||||||| | Sbjct 6370 AATGCAAATTTTCGTCAAAACCCTTACGGGTAAAACCATCACGCTTGAGGTTGAAGCGTC 6311 Query 27465 TGATAGCATTGCAAATTTGAAGGCTAAAATTCAGGACAAGGAGGGAATTCCTCCAGACCA 27524 || | ||| | ||| |||| || ||||||||||| ||||| || || || || ||||| Sbjct 6310 CGACACCATCGAAAACGTGAAAGCAAAAATTCAGGATAAGGAAGGGATCCCGCCCGACCA 6251 Query 27525 GCAGCGTCTAATTTTTGCTGGTAA 27548 ||||||||| |||||||| ||||| Sbjct 6250 GCAGCGTCTTATTTTTGCAGGTAA 6227 Score = 113 bits (124), Expect = 5e-20 Identities = 110/142 (77%), Gaps = 0/142 (0%) Strand=Plus/Minus Query 27406 ATGCAAATCTTTGTCAAGACGCTTACCGGCAAGACTATTACTCTTGAGGTTGAGTCAGGT 27465 ||||| || || || ||||| || || || || || |||||| | || |||||| | Sbjct 4853 ATGCAGATTTTCGTGAAGACTCTGACAGGGAAAACAATTACTTTGGAAGTTGAGGCCTCA 4794 Query 27466 GATAGCATTGCAAATTTGAAGGCTAAAATTCAGGACAAGGAGGGAATTCCTCCAGACCAG 27525 |||| || | ||| | ||||| ||||| |||||||||||||| || || || |||||| Sbjct 4793 GATACTATCGAGAATGTTAAGGCAAAAATCCAGGACAAGGAGGGGATCCCGCCCGACCAG 4734 Query 27526 CAGCGTCTAATTTTTGCTGGTA 27547 |||||||| ||||||||||||| Sbjct 4733 CAGCGTCTTATTTTTGCTGGTA 4712 Score = 113 bits (124), Expect = 5e-20 Identities = 110/142 (77%), Gaps = 0/142 (0%) Strand=Plus/Minus Query 27406 ATGCAAATCTTTGTCAAGACGCTTACCGGCAAGACTATTACTCTTGAGGTTGAGTCAGGT 27465 ||||||||||||||||| || ||||| ||||| || || ||| | || || || | Sbjct 6824 ATGCAAATCTTTGTCAAAACTCTTACTGGCAAAACAATCACTTTGGAAGTCGAAGCTTCC 6765 Query 27466 GATAGCATTGCAAATTTGAAGGCTAAAATTCAGGACAAGGAGGGAATTCCTCCAGACCAG 27525 || | |||| ||| |||| || ||||||||||| ||||| |||||||| || || || Sbjct 6764 GACACAATTGAGAATGTGAAAGCAAAAATTCAGGATAAGGAAGGAATTCCACCCGATCAA 6705 Query 27526 CAGCGTCTAATTTTTGCTGGTA 27547 |||||||| |||||||| |||| Sbjct 6704 CAGCGTCTTATTTTTGCAGGTA 6683 Score = 111 bits (122), Expect = 2e-19 Identities = 111/144 (77%), Gaps = 0/144 (0%) Strand=Plus/Minus Query 27406 ATGCAAATCTTTGTCAAGACGCTTACCGGCAAGACTATTACTCTTGAGGTTGAGTCAGGT 27465 ||||| || || || || || |||||||| || ||||| || || || |||||| | | Sbjct 5467 ATGCAGATTTTCGTTAAAACTCTTACCGGGAAAACTATAACGCTCGAAGTTGAGGCGTCT 5408 Query 27466 GATAGCATTGCAAATTTGAAGGCTAAAATTCAGGACAAGGAGGGAATTCCTCCAGACCAG 27525 |||| |||| ||| | || || || |||||||||||||| || |||||||| || || Sbjct 5407 GATACGATTGAGAATGTTAAAGCGAAGATTCAGGACAAGGAAGGGATTCCTCCGGATCAA 5348 Query 27526 CAGCGTCTAATTTTTGCTGGTAAG 27549 || ||| ||||||| ||||||||| Sbjct 5347 CAACGTTTAATTTTCGCTGGTAAG 5324 >seq2949 Length=15852 Score = 107 bits (118), Expect = 2e-18 Identities = 109/142 (77%), Gaps = 0/142 (0%) Strand=Plus/Plus Query 27406 ATGCAAATCTTTGTCAAGACGCTTACCGGCAAGACTATTACTCTTGAGGTTGAGTCAGGT 27465 ||||| || ||||| || || ||||| ||||| || || || | ||||| ||| | Sbjct 11331 ATGCAGATTTTTGTAAAAACCCTTACTGGCAAAACAATCACCTTAGAGGTGGAGGCTTCG 11390 Query 27466 GATAGCATTGCAAATTTGAAGGCTAAAATTCAGGACAAGGAGGGAATTCCTCCAGACCAG 27525 || | |||| |||| |||| || || |||||||||||||| || || ||||| || ||| Sbjct 11391 GACACAATTGAAAATGTGAAAGCGAAGATTCAGGACAAGGAAGGCATCCCTCCGGATCAG 11450 Query 27526 CAGCGTCTAATTTTTGCTGGTA 27547 |||||| |||||||||| |||| Sbjct 11451 CAGCGTTTAATTTTTGCAGGTA 11472 >seq285 Length=50150 Score = 96.9 bits (106), Expect = 4e-15 Identities = 109/146 (75%), Gaps = 0/146 (0%) Strand=Plus/Plus Query 27405 AATGCAAATCTTTGTCAAGACGCTTACCGGCAAGACTATTACTCTTGAGGTTGAGTCAGG 27464 ||||||||| || || || || | || || ||||| ||||||||||| ||||| | Sbjct 46265 AATGCAAATTTTCGTGAAAACTTTGACTGGTAAGACCATTACTCTTGAAGTTGAAGCTTC 46324 Query 27465 TGATAGCATTGCAAATTTGAAGGCTAAAATTCAGGACAAGGAGGGAATTCCTCCAGACCA 27524 || | || | || ||||||| ||||| || || |||||||| |||||||| || || Sbjct 46325 GGACACTATAGAGAACGTGAAGGCAAAAATCCAAGATAAGGAGGGTATTCCTCCCGATCA 46384 Query 27525 GCAGCGTCTAATTTTTGCTGGTAAGC 27550 |||||| | |||||||| ||| ||| Sbjct 46385 GCAGCGATTGATTTTTGCAGGTTAGC 46410 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 570169020051840