Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Enterobius_20vermicularis_20[genbank_20GCA_5F000951215.1_202014-09- 25] 19,832 sequences; 150,050,672 total letters Query= NC_029997.1 Length=105667 Score E Sequences producing significant alignments: (Bits) Value seq2430 109 4e-19 seq2949 87.8 1e-12 >seq2430 Length=18656 Score = 109 bits (120), Expect = 4e-19 Identities = 110/143 (77%), Gaps = 0/143 (0%) Strand=Plus/Minus Query 23611 ATGCAGATTTTCGTTAAAACCCTCACGGGAAAAACGATCACTCTCGAAGTTGACTCCACG 23670 ||||| ||||||||||| ||||| || || |||||||| || || |||||||| | || Sbjct 5152 ATGCAAATTTTCGTTAAGACCCTTACTGGGAAAACGATAACGCTTGAAGTTGAGGCTTCG 5093 Query 23671 GACACTGTTGAAATATTAAAACAAAAAATTGCTGACAAAGAAGGTGTACCGCCAGATCAA 23730 ||||| |||||| | ||| || ||| |||||||| || ||||||| |||||| Sbjct 5092 GACACCATTGAAAATGTGAAAGCGAAGATTCAAGACAAAGAGGGAATACCGCCGGATCAA 5033 Query 23731 CAGCGTTTAATATTTGCCGGCAA 23753 ||||||||||| || || || || Sbjct 5032 CAGCGTTTAATTTTCGCTGGTAA 5010 Score = 107 bits (118), Expect = 1e-18 Identities = 110/144 (76%), Gaps = 0/144 (0%) Strand=Plus/Minus Query 23610 AATGCAGATTTTCGTTAAAACCCTCACGGGAAAAACGATCACTCTCGAAGTTGACTCCAC 23669 |||||||||||| || ||||| || || || ||||| || ||||| |||||||| | | Sbjct 5765 AATGCAGATTTTTGTGAAAACGCTTACTGGCAAAACCATAACTCTTGAAGTTGAGGCGTC 5706 Query 23670 GGACACTGTTGAAATATTAAAACAAAAAATTGCTGACAAAGAAGGTGTACCGCCAGATCA 23729 ||||| |||||| | ||| ||||||| ||||||||||| | || || ||||| Sbjct 5705 TGACACGATTGAAAATGTCAAAGCAAAAATTCAGGACAAAGAAGGGATTCCTCCGGATCA 5646 Query 23730 ACAGCGTTTAATATTTGCCGGCAA 23753 ||||||||| || ||||| || || Sbjct 5645 ACAGCGTTTGATTTTTGCTGGTAA 5622 Score = 95.1 bits (104), Expect = 8e-15 Identities = 109/144 (76%), Gaps = 2/144 (1%) Strand=Plus/Minus Query 23611 ATGCAGATTTTCGTTAAAACCCTCACGGGAAAAACGATCACTCTCGAAGTTGACTCCACG 23670 |||||||||||||||||||| || || || ||||| || || ||||||||||| | | Sbjct 5467 ATGCAGATTTTCGTTAAAACTCTTACCGGGAAAACTATAACGCTCGAAGTTGAGGCGTCT 5408 Query 23671 GACACTGTTGA-AATATTAAAACAAAAAATTGCTGACAAAGAAGGTGTACCGCCAGATCA 23729 || || |||| ||| ||||| | || ||| ||||| ||||| | || || ||||| Sbjct 5407 GATACGATTGAGAATGTTAAAGC-GAAGATTCAGGACAAGGAAGGGATTCCTCCGGATCA 5349 Query 23730 ACAGCGTTTAATATTTGCCGGCAA 23753 ||| |||||||| || || || || Sbjct 5348 ACAACGTTTAATTTTCGCTGGTAA 5325 Score = 93.3 bits (102), Expect = 3e-14 Identities = 109/145 (75%), Gaps = 2/145 (1%) Strand=Plus/Minus Query 23610 AATGCAGATTTTCGTTAAAACCCTCACGGGAAAAACGATCACTCTCGAAGTTGACTCCAC 23669 ||||||||| || ||||| ||||| || |||||||| || ||||| ||||| || | | Sbjct 6062 AATGCAGATCTTTGTTAAGACCCTTACTGGAAAAACAATTACTCTTGAAGTAGAGGCTTC 6003 Query 23670 GGACACTGTTGA-AATATTAAAACAAAAAATTGCTGACAAAGAAGGTGTACCGCCAGATC 23728 ||||| |||| ||| | ||| | |||| | |||||||| || | || ||||||| Sbjct 6002 AGACACAATTGAGAATGTCAAAGCCAAAA-TCCAGGACAAAGAGGGAATTCCTCCAGATC 5944 Query 23729 AACAGCGTTTAATATTTGCCGGCAA 23753 |||| || ||||| ||||| || || Sbjct 5943 AACAACGATTAATTTTTGCTGGTAA 5919 >seq2949 Length=15852 Score = 87.8 bits (96), Expect = 1e-12 Identities = 105/143 (73%), Gaps = 0/143 (0%) Strand=Plus/Plus Query 23608 AAAATGCAGATTTTCGTTAAAACCCTCACGGGAAAAACGATCACTCTCGAAGTTGACTCC 23667 || ||||||||||| || |||||||| || || ||||| ||||| | || || || | Sbjct 11328 AAGATGCAGATTTTTGTAAAAACCCTTACTGGCAAAACAATCACCTTAGAGGTGGAGGCT 11387 Query 23668 ACGGACACTGTTGAAATATTAAAACAAAAAATTGCTGACAAAGAAGGTGTACCGCCAGAT 23727 ||||||| |||||| | ||| || ||| ||||| ||||| | || || ||| Sbjct 11388 TCGGACACAATTGAAAATGTGAAAGCGAAGATTCAGGACAAGGAAGGCATCCCTCCGGAT 11447 Query 23728 CAACAGCGTTTAATATTTGCCGG 23750 || ||||||||||| ||||| || Sbjct 11448 CAGCAGCGTTTAATTTTTGCAGG 11470 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 337927902234656