Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Enterobius_20vermicularis_20[genbank_20GCA_5F000951215.1_202014-09- 25] 19,832 sequences; 150,050,672 total letters Query= NC_030940.1 Length=32637 Score E Sequences producing significant alignments: (Bits) Value seq11225 172 1e-38 seq15822 125 1e-24 >seq11225 Length=1894 Score = 172 bits (190), Expect = 1e-38 Identities = 269/381 (71%), Gaps = 14/381 (4%) Strand=Plus/Plus Query 558 GCGCTAGGCTGACTGGTACGGGCAACCTAGGTGAACTGCTGATAAACACCGTAAGGATTG 617 |||||||||| ||||| || ||| | |||||||||| ||||| ||| | ||| Sbjct 180 GCGCTAGGCTTGATGGTATGGTTAACAGAAGTGAACTGCTCTTAAACGTCGTCAATATTA 239 Query 618 ACGAGCCAAAGCTGCTGACAGGCTCGAACCAAAAGGTAC-GTGGTCGGTTATCTCCGTAG 676 | |||||||| | |||| ||||| | |||||||| | || | || ||| | | Sbjct 240 AGCAGCCAAAGGTACTGAAAGGCTGTAGCCAAAAGGCAAAGTAGCTGGATATTCCTTTTT 299 Query 677 GTCGTGGAGATACGTCGCCTTCAGACC-ACCGGTGAAAAGGCAGGTCCTAACCCAGTCGT 735 | ||| ||||| | | |||| | ||||| | | |||||| ||||||||| ||| Sbjct 300 ATACTGGGAATACGCGGACAACAGAGCTACCGGCGGAGAGGCAGAACCTAACCCA-TCGC 358 Query 736 GTGACAGTCAGGGAACGTGGTAAGCCCGTATCGCCGCCC-TCGGGGCAGGGGAGCCGTAA 794 || | ||||| ||||||| |||||||| |||| | ||||||||| |||||| Sbjct 359 GTTCTTCGAACGGAACATGGTAAGTCCGTATCGTTGCCCATTCGGGCAGGGGCCCCGTAA 418 Query 795 GGCGAACTGTTGGCGGTGCGGGTATGGGATCGCAGAGAAAGCGAACGCCAGGCTGTAATC 854 || |||||| |||||||||| || ||| | ||||||||||| |||| |||||||| Sbjct 419 GGGAAACTGTCGGCGGTGCGGATAGAGGAGGACTGAGAAAGCGAAGGCCATTCTGTAATC 478 Query 855 GTCTGGATAGGGGTT----------GGAACATCACCCCACGGGAAACCGGGCAGACTTCT 904 | ||||||| |||| | ||||| ||| |||| |||| |||||| ||||| Sbjct 479 GAATGGATAGAGGTTGCGTCGCTGGGCAACATTACCTCACGCGAAAGCGGGCAAACTTCA 538 Query 905 GCGTGGTCTTTCGTCGCAAGA 925 | ||||||||| || | ||| Sbjct 539 GTCTGGTCTTTCATCACGAGA 559 Score = 149 bits (164), Expect = 1e-31 Identities = 750/1179 (64%), Gaps = 22/1179 (2%) Strand=Plus/Plus Query 1173 CAGGTACGGATTGCGAAGGCTTGTCGGGAAGGCAAATGGCGCAGGGTGAAGGCCCTACAA 1232 |||| ||| || | |||||| | |||||||| | |||| ||||| || || ||| Sbjct 692 CAGGCACGTATCGTGAAGGCAACACAGGAAGGCAGACATGGCAGAGTGAAAGCTCTGCAA 751 Query 1233 CGGATGCTGACCCGCTCGA-CGTCGGCCAGGTACCTGGCTGTACGGAGAGTCACTGAAAA 1291 || |||| |||| |||| | |||| | | | | || || | |||| || || || Sbjct 752 TGGCTGCTCACCCACTCGTTCAGCGGCAAAGCTC-TCGCCGTTAAGCGAGTGACAGAGAA 810 Query 1292 CCAGGGCAAGCGCACGGCGGGAGTCGACCGCGTGCTCTGGGATACGCCTGACACCAAGTG 1351 | ||||| || || | || || || | || ||| |||| | | | |||| Sbjct 811 TCGCGGCAAACGAACTTCTGGCGTGGATGGGGTTACGTGGTCTACGTCGAAGATCAAGCT 870 Query 1352 GAAAGCGGCACAAGGGTTGAAAAGGCGCGGGTACCAACCTCGGCCTCTACGGCGAGTGTT 1411 ||||| | | | | | | || || || | |||| ||| || |||| | | Sbjct 871 CAAAGCAGTATTATCACTCAGGCGACGGGGCTATCGTCCTCAGCCACTGAGGCGGATTTA 930 Query 1412 CATCCCGAAGTCGAACGGAAAGGAGCGCCCCCTGGGTATCCCGACCATGACTGACAGGGC 1471 |||||| || | ||||| ||| |||| | ||||| || || ||||| ||| |||| Sbjct 931 CATCCCCAAAGCCAACGGGAAGCAGCGGGCACTGGGCATTCCCTGCATGATCGACCGGGC 990 Query 1472 AATGCAGGCACTCTACCTGCTCGCTCTGTCGCCCATTGCAGAAACCACCGGCGATCCGAA 1531 ||||||||| || ||||||| ||| || || || ||||| |||| || ||||| Sbjct 991 GCAGCAGGCACTACACTTGCTCGCGCTGGAACCGATAGCCGAAACAACCGCAGACCCGAA 1050 Query 1532 CAGCTATGGCTTCAGGATCGAGCGATCCACGGCGGATGCAATGTCCCAGTTGTTCGTTTG 1591 | |||||| |||||| | || || ||||| |||||||| |||| ||| Sbjct 1051 CTCCTATGGGTTCAGGTCTGCCCGGTCAACGGCTGATGCAATTGAACAGTGTTTCAAGGC 1110 Query 1592 CCTATCCGGAAAGGCTTCGGCCCAATGGATACTGGAGGCGGACATACAAGGGTGTTTTGA 1651 || || | | || || ||||||| || || || ||||| | | || ||||| Sbjct 1111 ACTTTCACACACCGATTGTGCGGAATGGATCCTTGAAGCTGACATCCGTAGCTGCTTTGA 1170 Query 1652 CCACATCAATCATGACTGGCTACTGAACCATGTCCCCACGGACAAGGTGATCCTCCGGAA 1711 | | || || ||||||| | | || |||| | |||||||| |||| | || | Sbjct 1171 CGAAATATCGCACAACTGGCTGATCGCCAATATCCCGATGGACAAGGCGATCTTACGAAT 1230 Query 1712 ATGGTTGAAGGCCGGCGTGATCCACAA--AGGCCAGCTCCAGGCAACGGATGCTGGAACA 1769 ||| |||| || ||| | ||| | | | | || | |||| | || || ||| Sbjct 1231 GTGGCTGAAAGCTGGCTACTTTCACCATAATGTC--CTTTATCCAACAGCGGCGGGCACA 1288 Query 1770 CCTCAAGGCGGAATCATCTCGCCTACTTTGGCAAACATGGTGCTCGATGGCCTGGAATCA 1829 || ||||| || ||||| ||||| || ||| || ||| || ||||| | ||| Sbjct 1289 CCCCAAGGGGGGATCATATCGCCAACGTTGATGAATATGACTCTAGATGGATTAGAACAC 1348 Query 1830 CAGCTCAAGCGAC---ACCTGGGCGTGACAAGGGCGAAGAAGCTGAAACTCAATGTGGTG 1886 | ||| ||||| | || || | || | ||| ||||| | || Sbjct 1349 CTGCT---GCGACTTAAATATCGCAGGAGTACCCGCAATCCGTCGAAGGTCAATATCGTT 1405 Query 1887 CGCTATGCGGACGACTTCGTCATCACCGGTGTCTCTCCCGAGGTACTGGAGAAAGAAGTC 1946 || ||||||||||||||| |||| |||||||| ||| || | |||| ||||||| Sbjct 1406 CGATATGCGGACGACTTCATCATAACCGGTGTGACTCGTGAAATGCTGGCAGAAGAAGTT 1465 Query 1947 AAACCCTGGGTAGAGCAGTTCCTGGCGGTACGCGGGCTGCAGCTCTCTCTGGAGAAAACG 2006 | || ||| |||||||| ||||||| || || || | | || | || || || Sbjct 1466 ATCCCTATGGTCGAGCAGTTTCTGGCGGAGCGGGGTCTCTCGATGTCGCCAGAAAAGACC 1525 Query 2007 CGGATCGCCCACATAGATCAGGGCTTCGACTTCCTCGGTTGGAACTTCCGCAAGTACAAC 2066 ||||| | || || | || |||||||||||||| |||| | ||||| || Sbjct 1526 AGGATCACGCATATCAGCGATGGATTCGACTTCCTCGGCATGAACGTACGCAAATATGGG 1585 Query 2067 GGGAAGCTTCTGATCAAACCCAGCCAGAAGAACG-CGAAAGCGTTCTACGGCAAGGTGAA 2125 || || | | ||||||||| || | | || || | |||| | |||| || | Sbjct 1586 GGCAAATTGTTAATCAAACCCGCCCCTACCAGCGTTCAACGTTTTCTGC-GCAAAGTAAG 1644 Query 2126 GGAGGTCATCGAAACCA--GCAGGACGGCAAGGCAAGAGGACTTGATCCGAACGCTGAAT 2183 ||| || ||| | || ||| | || |||| || |||| |||| || || Sbjct 1645 GGAAGTGATCAAGGGCAATGCA--ATGGTGCGGCACGACATACTGATACGAAGACTCAAC 1702 Query 2184 CCGATTCTGCGCGGCTGGGCGCTGTATCACCAGCCAGTGGTTGCCAAGCAAACGTTCAGC 2243 ||||| || || || ||||| || | |||| || || | || || |||||||| Sbjct 1703 CCGATGCTTCGTGGATGGGCCAATTACAATCAGCATGTTGTGACGAAACAGACGTTCAGG 1762 Query 2244 CGCAT-GGACAACAGAGTGTTTCTCAAGCTCTGGCGTTGGGCGAAACGGCGGCACCCGAA 2302 || | | || | | || | || ||||||||||| ||||| ||||| || | Sbjct 1763 AAAATCAGTTATGCGA-TATGGCTAAGCCTGTGGCGTTGGGCAAAACGTCGGCATCCCCA 1821 Query 2303 CAA-GTCACTGGATTGGATCAGGAGGCGATATTTCCGGA 2340 ||| | | | ||| |||||| || || ||| ||||||| Sbjct 1822 CAAGGGCGCAGGA-TGGATCCGGCGGAAATACTTCCGGA 1859 >seq15822 Length=778 Score = 125 bits (138), Expect = 1e-24 Identities = 287/431 (67%), Gaps = 12/431 (3%) Strand=Plus/Minus Query 12745 TCGCCGGTCCAGTACGGATATGCCTGGTGCGTTACCGCGCTGGGCGTGGAGAAGTAGGTC 12804 || || | |||| |||| || || | ||||| | || | || |||||||| |||||| Sbjct 706 TCACCCGACCAGAACGGGTAGGCGTCGTGCGCCAGCGTGGACGGGGTGGAGAAATAGGTC 647 Query 12805 AGGCGCCACTTTGCATGCGAGGCCATCGCGCTGGCCACCGTCTGCAGCTTCTGGAAATTG 12864 |||| | || |||||||| | |||||| | |||| ||| ||||| Sbjct 646 GAGCGCAGGTGACTCTGTGAGGCCATACCTGATGCCACCTTACGCAGTACCTGAAAATTC 587 Query 12865 GGGATCCAGAACACTTCGTCGATGTAGACGTGGCCGTGGTAGCTCTGCGCCGTGTTGCTG 12924 ||||||||||| | ||||||| ||| | || ||||| | ||||||||| |||||| | Sbjct 586 GGGATCCAGAAAATCTCGTCGACGTACAGGTCGCCGTTATGGCTCTGCGCGGTGTTGGAG 527 Query 12925 TTCGTCGAGAGAAACCGCAGTTCCGCCCACGGCTTGCCGTCTTTGCTCAAGATGATGGGA 12984 || || |||||| ||||| || ||||| |||| || || || || Sbjct 526 TTGGTGCCGAGAAAAATCAGTTTTGC---------GCCGTTATTGCCCAGGACAATCGGG 476 Query 12985 TTGCCGGACAGCTCGATATCGAACCATTGCGCGGCGAAGGCGACGATGTAGCTGCGGAAC 13044 | |||| || || | || ||||| | ||| ||||||| |||||| ||||||| Sbjct 475 TCACCGGTAAGGTCAACGTC-AACCA--GATGGGCAAAGGCGATGATGTATTCGCGGAAC 419 Query 13045 ACTTCGGACTGGGCGCGGCTCGCGGACAGGAAAATCTGGTTGTCCCCGGTCAGCACTGCG 13104 || | | ||| | || || ||||| ||||||||||| | ||||| || ||| Sbjct 418 ACATACGCCTGCGTTTTACTGGCCGACAGAAAAATCTGGTTATGACCGGTTTTCAGGGCG 359 Query 13105 TCCATGAACGCTTCGGCGGCGAAGTAGTAGGTCAGCCCGATCTGGCGCGACTTCAGGATA 13164 || | ||| ||| || || || | || || |||||||| || ||||||||| Sbjct 358 CGCAGCAGCGCCTCGCGGGAAAAATAAAACGTTGCGCCAATCTGGCGGGATTTCAGGATA 299 Query 13165 TGGCGGATCCG 13175 | |||||| || Sbjct 298 TCGCGGATGCG 288 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 104292232872016