Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Enterobius_20vermicularis_20[genbank_20GCA_5F000951215.1_202014-09- 25] 19,832 sequences; 150,050,672 total letters Query= NC_031129.1 Length=103445 Score E Sequences producing significant alignments: (Bits) Value seq13931 1727 0.0 seq18843 744 0.0 >seq13931 Length=1057 Score = 1727 bits (1914), Expect = 0.0 Identities = 995/1020 (98%), Gaps = 0/1020 (0%) Strand=Plus/Minus Query 1172 GTTTCAACGATCAGAACAACCGCAACCGGTTTAACGAATATTGGAGGGCTGGCAACTCAG 1231 ||||||||||| ||||||||| |||||| |||||||| ||||||| ||||||||| || Sbjct 1020 GTTTCAACGATAAGAACAACCACAACCGACTTAACGAACATTGGAGAACTGGCAACTAAG 961 Query 1232 CACGCGGACCTGTTGGCTGGTTATGCTGATCTGTCAATGCTCCTTCAACTCGATATTGGT 1291 |||||||||||||||||||||||||| |||||||||||||| |||||||||||||||||| Sbjct 960 CACGCGGACCTGTTGGCTGGTTATGCAGATCTGTCAATGCTGCTTCAACTCGATATTGGT 901 Query 1292 TGGGATGTTTACTGTCGTGCTAATGAGCGAGAAGTTTCAGAACTGCCGATCTCTATTGCC 1351 |||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||| Sbjct 900 TGGGATGTTTACTGCCGTGCTAATGAGCGAGAAGTTTCAGAACTGCCGATCTCTATTGCC 841 Query 1352 ATTGGTGATGTGACTATTACTAAATCGCTTGAGGACGCTGTAAACGCGCTTAATACATCA 1411 ||||||||||||| ||||||||||||||||||||||||||| |||||||||||||||||| Sbjct 840 ATTGGTGATGTGAATATTACTAAATCGCTTGAGGACGCTGTTAACGCGCTTAATACATCA 781 Query 1412 AGTTTAGTCGCGGCTATGGGGGAGATTAACCAGACCCTTAACACTGGCTCAGGAAGCTCG 1471 ||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 780 AGTTTAGTCGCTGCTATGGGGGAGATTAACCAGACCCTTAACACTGGCTCAGGAAGCTCG 721 Query 1472 TCAGGCTCTGGTTCAGGCGGCGGCACTGCCACTCCCCCACCAGCACTAACAGAAGAGCAA 1531 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 720 TCAGGCTCTGGTTCAGGCGGCGGCACTGCCACTCCCCCACCAGCACTAACAGAAGAGCAA 661 Query 1532 ATTGAATCTCTGAAAGTAGCAACTGAACAGTTTGGGGTTGTTTTCAACCAGACAACAGCA 1591 ||||||||||||||||||||||||||||||||||||||||||||||||||||||||| | Sbjct 660 ATTGAATCTCTGAAAGTAGCAACTGAACAGTTTGGGGTTGTTTTCAACCAGACAACAACG 601 Query 1592 CCCACAACTGCGTTACAACAGCAGTATGAACGAGCGAATGAAAGCGCCAACGTAGCCATA 1651 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 600 CCCACAACTGCGTTACAACAGCAGTATGAACGAGCGAATGAAAGCGCCAACGTAGCCATA 541 Query 1652 ACTGCTTATAACCATGCTATCGGTACCGCGCTTGCGGAAGCATCAGCAAATAAGGCCAGC 1711 ||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||| Sbjct 540 ACTGCTTATAACCATGCTATCGGTACCGCGCTTGCGGAAGCATCAGCAAATAAGGTCAGC 481 Query 1712 ACAGCCAGCGCAATCGCCGCTTTGGTTCCTGATTCTGTTCTTGATGAATTAAACAAAGCG 1771 |||||||||||| | ||||||||||||||||||||||||||||||||||||||||||||| Sbjct 480 ACAGCCAGCGCAGTTGCCGCTTTGGTTCCTGATTCTGTTCTTGATGAATTAAACAAAGCG 421 Query 1772 ACACAGTAACAAAGGACTTCATTGATAATTTTTCTTCAGGAGGAAGACATGTCATTCTTT 1831 ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 420 GCACAGTAACAAAGGACTTCATTGATAATTTTTCTTCAGGAGGAAGACATGTCATTCTTT 361 Query 1832 TCTACATTAAAAACAGCTTTGTCTTTGAAGGAGAAACTTGCTGCTACTGGTGTTCTTGTT 1891 ||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 360 TCTACGTTAAAAACAGCTTTGTCTTTGAAGGAGAAACTTGCTGCTACTGGTGTTCTTGTT 301 Query 1892 CTGATTTGCGCACTTGTTGGTGCTGGGTTTGCGTGGGAACGTCATCAGCTAAAGCAAGCC 1951 |||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||| Sbjct 300 CTGATTTGCGCACTTGTTGGTGCTGGGTTTGCATGGGAACGTCATCAGCTAAAGCAAGCC 241 Query 1952 ATGGAGAAAATTGGCAGTCTTGATCAGGCTGTTAAGGAACGTGATAAGTCAATAATGGAT 2011 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 240 ATGGAGAAAATTGGCAGTCTTGATCAGGCTGTTAAGGAACGTGATAAGTCAATAATGGAT 181 Query 2012 CTTAACCAGACCATTGAGACGATGAACAAAGCAGAGCAACATTTTCACAGCCAGGAAGTG 2071 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 180 CTTAACCAGACCATTGAGACGATGAACAAAGCAGAGCAACATTTTCACAGCCAGGAAGTG 121 Query 2072 AAAAATGAATCAGAACAAGCCAAGTATGCTGACAGGCAAATGGAACGAAAAGCTGAAGTT 2131 ||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||| Sbjct 120 AAAAATGAATCAGAACAAGCCAAATATGCTGACAGGCAAATGGAACGAAAAGCTGAAGTT 61 Query 2132 CAGAAACAACTTGTTGCGGCGGGTAATGTTCGCCAGCGTATTCCTGCTGACACTCAGCGG 2191 ||||||||||| |||||||||||||||||||||||||| ||||||||||||||||||||| Sbjct 60 CAGAAACAACTGGTTGCGGCGGGTAATGTTCGCCAGCGCATTCCTGCTGACACTCAGCGG 1 >seq18843 Length=549 Score = 744 bits (824), Expect = 0.0 Identities = 442/462 (96%), Gaps = 0/462 (0%) Strand=Plus/Minus Query 57755 CATTGCCCTGATGTAGTCGGCGCTGGCAACGTTGTTGTATTCCGTCGCAAAGCAACATAG 57814 ||||| |||||||||||| ||||| | |||||||||||||| || || ||||| |||| Sbjct 462 CATTGTCCTGATGTAGTCTGCGCTTACCACGTTGTTGTATTCTGTTGCGAAGCAGCATAA 403 Query 57815 TAACGTCAGAACATGTTCTGTCGTTATTTCGCTCCAGTTGATGTTGAAAAATTCATCGCC 57874 |||||||||||||| ||||||||||||||| ||||||||||||||||||| |||||||| Sbjct 402 CAACGTCAGAACATGCTCTGTCGTTATTTCGATCCAGTTGATGTTGAAAAACTCATCGCC 343 Query 57875 TTTTTTATCGTGTTCGGAATCGAAGATGCTTTGGTGAAGGATGTATTTGCCGGATTCCTT 57934 |||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||| Sbjct 342 TTTTTTATCGTGTTCGGAATCGAAGATGCTTTGGTGGAGGATGTATTTGCCGGATTCCTT 283 Query 57935 GCGCGGTAACTTGATCGCTTTCTGGCGTTCCAATTCCTTGTAAATCTGCATTGCTTCAAT 57994 ||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||| Sbjct 282 GCGCGGTAACTTGATCGCTTTCTGGCGTTCCAACTCCTTGTAAATCTGCATTGCTTCAAT 223 Query 57995 CAGTACCGGTCTGCCGTTCATGAAGGGATCACGCAACCTTACACGCTGGCCAACTCGACC 58054 |||||||| |||||||||||||||||||| ||||||||||||||||||||||||||||| Sbjct 222 TAGTACCGGCCTGCCGTTCATGAAGGGATCGCGCAACCTTACACGCTGGCCAACTCGACC 163 Query 58055 GGTAATAAAGCTGTTTTCCTCTTCCACCAGCACGATAAAACCCTTTTCCTCTTTTTCTCG 58114 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 162 GGTAATAAAGCTGTTTTCCTCTTCCACCAGCACGATAAAACCCTTTTCCTCTTTTTCTCG 103 Query 58115 CAATTCGCGCAGCAGCTGGAGTTCCATATCGCGGCGGCGTTCAGGGTAGCTGGTCCGCTC 58174 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 102 CAATTCGCGCAGCAGCTGGAGTTCCATATCGCGGCGGCGTTCAGGGTAGCTGGTCCGCTC 43 Query 58175 AGCCATTATCAGCTCATTGTTGATCCATGCAGCAGTCATTGA 58216 ||||||||||||||| |||||||||||||||||||||||||| Sbjct 42 AGCCATTATCAGCTCGTTGTTGATCCATGCAGCAGTCATTGA 1 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 330819220836112