Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Globodera_20ellingtonae_20[genbank_20GCA_5F001723225.1_202016-09-12] 2,246 sequences; 105,964,814 total letters Query= NC_001611.1 Length=185578 Score E Sequences producing significant alignments: (Bits) Value seq127 127 2e-24 >seq127 Length=223113 Score = 127 bits (140), Expect = 2e-24 Identities = 217/309 (70%), Gaps = 17/309 (6%) Strand=Plus/Plus Query 24183 GAAAACGTGAGTCCGGGCATTAGGCCACGCTTTTTAAGCCAAAATATGG-ACGCAAATGA 24241 ||||| || | || ||||||||||| || |||||||||||||| |||| || ||| | Sbjct 209120 GAAAAGGTTAACCCTGGCATTAGGCCTCGTTTTTTAAGCCAAAAGATGGCACAAAAACTA 209179 Query 24242 TCCAGAAAAGAAAATTCCTTCTACTGCCGCAAAGGCAATAAGTCTTTCTCCA---TAACC 24298 |||||||| || || || ||||| || ||||| |||||||| |||||| || |||| Sbjct 209180 -CCAGAAAAAAAGATGCCCTCTACCGCAGCAAAAGCAATAAGCCTTTCTACAAAGGAACC 209238 Query 24299 GGCGCTGTCATGTATCCACTTTTGAGCCCAATCGGCCTTCTTTTTTACACAAGGCATTGT 24358 ||| ||||| ||||||||| || || || ||| || || || Sbjct 209239 CTTGCT------AATCCAACGCAAAGCCCAATCTGCTTTTTTACCTACCCATTCAATCGT 209292 Query 24359 CTCTATAGCATTAAAGA---GATAGtttttttCATTACTATCTTTAACATATGTATCAAT 24415 ||| ||||||||||| | ||| | | || | | ||| |||||||| || || || Sbjct 209293 CTCCATAGCATTAAATAACCGATGGCGCTCTT-GTGA--ATCCTTAACATAGGTGTCGAT 209349 Query 24416 CAAAAGACTATACATTTCCGAATGAATGTTTTCAATGGCCATTTGAAATCCGTAGAAACA 24475 || | | ||| | || |||||||| |||||||| || ||||||||||| || ||| | Sbjct 209350 TAATAAAGAATAAGTCTCAGAATGAATATTTTCAATAGCTATTTGAAATCCATAAAAAAA 209409 Query 24476 TCTAGCCTC 24484 |||| || Sbjct 209410 CTTAGCTTC 209418 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 593704931266080