Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Globodera_20ellingtonae_20[genbank_20GCA_5F001723225.1_202016-09-12] 2,246 sequences; 105,964,814 total letters Query= NC_001973.1 Length=161046 Score E Sequences producing significant alignments: (Bits) Value seq62 118 1e-21 seq9 118 1e-21 seq202 109 6e-19 seq32 93.3 4e-14 seq400 87.8 2e-12 seq275 87.8 2e-12 seq97 87.8 2e-12 >seq62 Length=411361 Score = 118 bits (130), Expect = 1e-21 Identities = 165/229 (72%), Gaps = 2/229 (1%) Strand=Plus/Minus Query 40690 ATGCAAATATTCGTAAAAACGCTCACGGGCAAAACCATCACCGTCGACGTCGAAGCCACC 40749 |||||||| ||||| || || || || |||||||| ||||| | ||||| || | Sbjct 311507 ATGCAAATTTTCGTGAAGACACTGACCGGCAAAACGATCACTTTGGACGTGGAGAGTTCG 311448 Query 40750 GACAGCGTGCA-AACGCTCAAGGAAAAAATTCTCGACAAAGAGGGCATCCCCGCGGACCA 40808 |||| || | |||| | ||| || || | ||||| ||||||||||| | || || Sbjct 311447 GACACAGTTGACAACG-TGAAGACGAAGATCCAGGACAAGGAGGGCATCCCGCCTGATCA 311389 Query 40809 GCAACGACTCATCTACGCGGGCAAACAGCTGGACGACGAGCGCACCCTCAACGACTACAA 40868 |||||| || |||| || ||||||||||| || || | ||||| | ||||||||| Sbjct 311388 GCAACGGCTGATCTTTGCCGGCAAACAGCTCGAAGATGGCCGCACGTTGGCCGACTACAA 311329 Query 40869 CATCCAGAAGGAGGCCACGCTGCATCTAGTGTTGCGCTTGAGGGGCGGC 40917 ||| ||||||||| | || || || | || | ||| | ||||||||| Sbjct 311328 CATTCAGAAGGAGTCTACTCTTCACTTGGTCCTTCGCCTCAGGGGCGGC 311280 >seq9 Length=1094565 Score = 118 bits (130), Expect = 1e-21 Identities = 165/229 (72%), Gaps = 2/229 (1%) Strand=Plus/Minus Query 40690 ATGCAAATATTCGTAAAAACGCTCACGGGCAAAACCATCACCGTCGACGTCGAAGCCACC 40749 |||||||| ||||| || || || || |||||||| ||||| | ||||| || | Sbjct 204598 ATGCAAATTTTCGTGAAGACACTGACCGGCAAAACGATCACTTTGGACGTGGAGAGTTCG 204539 Query 40750 GACAGCGTGCA-AACGCTCAAGGAAAAAATTCTCGACAAAGAGGGCATCCCCGCGGACCA 40808 |||| || | |||| | ||| || || | ||||| ||||||||||| | || || Sbjct 204538 GACACAGTTGACAACG-TGAAGACGAAGATCCAGGACAAGGAGGGCATCCCGCCTGATCA 204480 Query 40809 GCAACGACTCATCTACGCGGGCAAACAGCTGGACGACGAGCGCACCCTCAACGACTACAA 40868 |||||| || |||| || ||||||||||| || || | ||||| | ||||||||| Sbjct 204479 GCAACGGCTGATCTTTGCCGGCAAACAGCTCGAAGATGGCCGCACGTTGGCCGACTACAA 204420 Query 40869 CATCCAGAAGGAGGCCACGCTGCATCTAGTGTTGCGCTTGAGGGGCGGC 40917 ||| ||||||||| | || || || | || | ||| | ||||||||| Sbjct 204419 CATTCAGAAGGAGTCTACTCTTCACTTGGTCCTTCGCCTCAGGGGCGGC 204371 >seq202 Length=131032 Score = 109 bits (120), Expect = 6e-19 Identities = 163/229 (71%), Gaps = 2/229 (1%) Strand=Plus/Minus Query 40693 CAAATATTCGTAAAAACGCTCACGGGCAAAACCATCACCGTCGACGTCGAAGCCACCGAC 40752 || ||||||||||| || |||| || || |||||||| | | || || ||| | | Sbjct 51601 CAGATATTCGTAAAGACTTTCACCGGGAAGACCATCACTCTGAAGGTTGAGACCAGTGGC 51542 Query 40753 AGCGT-GCAAACGCTCAAGGAAAAAATTCTCGACAAAGAGGGCATCCCCGCGGACCAGCA 40811 | | || |||| | ||| ||||| | ||||||||||| || | |||| || || Sbjct 51541 ACTATCGCGAACG-TGAAGACCAAAATCCATGACAAAGAGGGGATTCGGCCGGAGCAACA 51483 Query 40812 ACGACTCATCTACGCGGGCAAACAGCTGGACGACGAGCGCACCCTCAACGACTACAACAT 40871 |||||| || | ||||| |||||| |||||||| | ||| | | |||||||||||| Sbjct 51482 ACGACTGATATTTGCGGGGAAACAGTTGGACGACATGTGCAGCGTGGCCGACTACAACAT 51423 Query 40872 CCAGAAGGAGGCCACGCTGCATCTAGTGTTGCGCTTGAGGGGCGGCGGC 40920 || |||||| | | || |||||| |||||| ||| | || || ||| Sbjct 51422 TCAAAAGGAGTCTAACCTCCATCTAACGTTGCGGTTGTGCGGAGGTGGC 51374 >seq32 Length=600051 Score = 93.3 bits (102), Expect = 4e-14 Identities = 159/231 (69%), Gaps = 0/231 (0%) Strand=Plus/Minus Query 40689 AATGCAAATATTCGTAAAAACGCTCACGGGCAAAACCATCACCGTCGACGTCGAAGCCAC 40748 ||||||||| || || ||||| | ||||| ||| |||| || | || || | | | Sbjct 414570 AATGCAAATTTTTGTGAAAACTTTGACGGGAAAAGCCATGACGCTGGAGGTGCACAGCTC 414511 Query 40749 CGACAGCGTGCAAACGCTCAAGGAAAAAATTCTCGACAAAGAGGGCATCCCCGCGGACCA 40808 |||| | | | | | || | ||| | | | || || |||||||| | | || Sbjct 414510 GGACACCATCAACAATGTGAAACAGAAAGTCCAGGCCATGGAAGGCATCCCAACTAAACA 414451 Query 40809 GCAACGACTCATCTACGCGGGCAAACAGCTGGACGACGAGCGCACCCTCAACGACTACAA 40868 ||||||||| |||| |||||||||||||| || || || |||| | |||||||| Sbjct 414450 GCAACGACTGATCTTTGCGGGCAAACAGCTCGATGATGATGGCACTTTGGCTGACTACAA 414391 Query 40869 CATCCAGAAGGAGGCCACGCTGCATCTAGTGTTGCGCTTGAGGGGCGGCGG 40919 ||| || ||||| || | ||| ||||| || ||||| | ||||||| || Sbjct 414390 CATTCAAAAGGACGCAATGCTTCATCTGCTGCTGCGCCTCCGGGGCGGAGG 414340 >seq400 Length=47941 Score = 87.8 bits (96), Expect = 2e-12 Identities = 89/116 (77%), Gaps = 0/116 (0%) Strand=Plus/Plus Query 40783 GACAAAGAGGGCATCCCCGCGGACCAGCAACGACTCATCTACGCGGGCAAACAGCTGGAC 40842 || || |||||||| || |||| ||||| ||||| |||| ||| || || ||||| || Sbjct 29824 GATAAGGAGGGCATTCCGCCGGATCAGCATCGACTAATCTTCGCCGGAAAGCAGCTCGAA 29883 Query 40843 GACGAGCGCACCCTCAACGACTACAACATCCAGAAGGAGGCCACGCTGCATCTAGT 40898 |||| | | | | | ||||||||||||||||||||| |||| || ||||| || Sbjct 29884 GACGGTCACGCTTTGACCGACTACAACATCCAGAAGGAATCCACTCTCCATCTTGT 29939 >seq275 Length=99064 Score = 87.8 bits (96), Expect = 2e-12 Identities = 89/116 (77%), Gaps = 0/116 (0%) Strand=Plus/Plus Query 40783 GACAAAGAGGGCATCCCCGCGGACCAGCAACGACTCATCTACGCGGGCAAACAGCTGGAC 40842 || || |||||||| || |||| ||||| ||||| |||| ||| || || ||||| || Sbjct 19735 GATAAGGAGGGCATTCCGCCGGATCAGCATCGACTAATCTTCGCCGGAAAGCAGCTCGAA 19794 Query 40843 GACGAGCGCACCCTCAACGACTACAACATCCAGAAGGAGGCCACGCTGCATCTAGT 40898 |||| | | | | | ||||||||||||||||||||| |||| || ||||| || Sbjct 19795 GACGGTCACGCTTTGACCGACTACAACATCCAGAAGGAATCCACTCTCCATCTTGT 19850 >seq97 Length=302941 Score = 87.8 bits (96), Expect = 2e-12 Identities = 89/116 (77%), Gaps = 0/116 (0%) Strand=Plus/Minus Query 40783 GACAAAGAGGGCATCCCCGCGGACCAGCAACGACTCATCTACGCGGGCAAACAGCTGGAC 40842 || || |||||||| || |||| ||||| ||||| |||| ||| || || ||||| || Sbjct 46220 GATAAGGAGGGCATTCCGCCGGATCAGCATCGACTAATCTTCGCCGGAAAGCAGCTCGAA 46161 Query 40843 GACGAGCGCACCCTCAACGACTACAACATCCAGAAGGAGGCCACGCTGCATCTAGT 40898 |||| | | | | | ||||||||||||||||||||| |||| || ||||| || Sbjct 46160 GACGGTCACGCTTTGACCGACTACAACATCCAGAAGGAATCCACTCTCCATCTTGT 46105 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 515204735220960