Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Globodera_20ellingtonae_20[genbank_20GCA_5F001723225.1_202016-09-12] 2,246 sequences; 105,964,814 total letters Query= NC_002169.1 Length=135611 Score E Sequences producing significant alignments: (Bits) Value seq62 143 2e-29 seq9 143 2e-29 seq32 102 7e-17 seq4 87.8 2e-12 seq234 86.0 5e-12 seq36 86.0 5e-12 seq703 82.4 7e-11 seq555 82.4 7e-11 seq551 82.4 7e-11 >seq62 Length=411361 Score = 143 bits (158), Expect = 2e-29 Identities = 161/212 (76%), Gaps = 4/212 (2%) Strand=Plus/Plus Query 118530 ACCAAGTGGATTGTAGACTCTTTTTGAATGTTGTAATCGCTCATAGTGCGCGTATCCTCG 118589 |||||||| | |||||||| || ||||||||||| ||| || ||||| ||| ||| Sbjct 311299 ACCAAGTGAAGAGTAGACTCCTTCTGAATGTTGTAGTCGGCCAACGTGCGGCCATCTTCG 311358 Query 118590 AGCTGTTTTCCAGCGTAGATGAGACGCTGCTGATCGGGAGGTATGCCCTCCTTGT-CTGT 118648 |||||||| || || |||| || || |||||||| || || ||||||||||||| ||| Sbjct 311359 AGCTGTTTGCCGGCAAAGATCAGCCGTTGCTGATCAGGCGGGATGCCCTCCTTGTCCTGG 311418 Query 118649 AATTTTTTGT-TTAACCTGTTCGACGGTGTCCGTGCTCTCGACCTCGACGGTCACCGTTT 118707 | | || || || || | || || ||||||| ||||| || || | || | ||||| Sbjct 311419 A--TCTTCGTCTTCACGTTGTCAACTGTGTCCGAACTCTCCACGTCCAAAGTGATCGTTT 311476 Query 118708 TGCCGGTCAGAGTTTTTACAAAAATCTGCATG 118739 |||||||||| || || || ||||| |||||| Sbjct 311477 TGCCGGTCAGTGTCTTCACGAAAATTTGCATG 311508 >seq9 Length=1094565 Score = 143 bits (158), Expect = 2e-29 Identities = 161/212 (76%), Gaps = 4/212 (2%) Strand=Plus/Plus Query 118530 ACCAAGTGGATTGTAGACTCTTTTTGAATGTTGTAATCGCTCATAGTGCGCGTATCCTCG 118589 |||||||| | |||||||| || ||||||||||| ||| || ||||| ||| ||| Sbjct 204390 ACCAAGTGAAGAGTAGACTCCTTCTGAATGTTGTAGTCGGCCAACGTGCGGCCATCTTCG 204449 Query 118590 AGCTGTTTTCCAGCGTAGATGAGACGCTGCTGATCGGGAGGTATGCCCTCCTTGT-CTGT 118648 |||||||| || || |||| || || |||||||| || || ||||||||||||| ||| Sbjct 204450 AGCTGTTTGCCGGCAAAGATCAGCCGTTGCTGATCAGGCGGGATGCCCTCCTTGTCCTGG 204509 Query 118649 AATTTTTTGT-TTAACCTGTTCGACGGTGTCCGTGCTCTCGACCTCGACGGTCACCGTTT 118707 | | || || || || | || || ||||||| ||||| || || | || | ||||| Sbjct 204510 A--TCTTCGTCTTCACGTTGTCAACTGTGTCCGAACTCTCCACGTCCAAAGTGATCGTTT 204567 Query 118708 TGCCGGTCAGAGTTTTTACAAAAATCTGCATG 118739 |||||||||| || || || ||||| |||||| Sbjct 204568 TGCCGGTCAGTGTCTTCACGAAAATTTGCATG 204599 >seq32 Length=600051 Score = 102 bits (112), Expect = 7e-17 Identities = 137/191 (72%), Gaps = 0/191 (0%) Strand=Plus/Plus Query 118548 TCTTTTTGAATGTTGTAATCGCTCATAGTGCGCGTATCCTCGAGCTGTTTTCCAGCGTAG 118607 || |||||||||||||| || || ||||| ||| ||||||||||| || || || Sbjct 414379 TCCTTTTGAATGTTGTAGTCAGCCAAAGTGCCATCATCATCGAGCTGTTTGCCCGCAAAG 414438 Query 118608 ATGAGACGCTGCTGATCGGGAGGTATGCCCTCCTTGTCTGTAATTTTTTGTTTAACCTGT 118667 || || || ||||| | | || ||||| ||| || | | ||| ||||| || | Sbjct 414439 ATCAGTCGTTGCTGTTTAGTTGGGATGCCTTCCATGGCCTGGACTTTCTGTTTCACATTG 414498 Query 118668 TCGACGGTGTCCGTGCTCTCGACCTCGACGGTCACCGTTTTGCCGGTCAGAGTTTTTACA 118727 | || |||||||| ||| | ||||| | |||| | ||| || |||| |||||| ||| Sbjct 414499 TTGATGGTGTCCGAGCTGTGCACCTCCAGCGTCATGGCTTTTCCCGTCAAAGTTTTCACA 414558 Query 118728 AAAATCTGCAT 118738 ||||| ||||| Sbjct 414559 AAAATTTGCAT 414569 >seq4 Length=1352950 Score = 87.8 bits (96), Expect = 2e-12 Identities = 99/133 (74%), Gaps = 0/133 (0%) Strand=Plus/Minus Query 118606 AGATGAGACGCTGCTGATCGGGAGGTATGCCCTCCTTGTCTGTAATTTTTTGTTTAACCT 118665 |||| |||||||||||||| || || |||||||||||||| || || || || | Sbjct 417234 AGATCAGACGCTGCTGATCAGGCGGAATGCCCTCCTTGTCCTGGATCTTGGCCTTCACGT 417175 Query 118666 GTTCGACGGTGTCCGTGCTCTCGACCTCGACGGTCACCGTTTTGCCGGTCAGAGTTTTTA 118725 |||| |||||| || ||||||||| | || | || |||||||| ||||| || | Sbjct 417174 TCTCGATGGTGTCGCTGGCCTCGACCTCCAAAGTGATGGTCTTGCCGGTGAGAGTCTTGA 417115 Query 118726 CAAAAATCTGCAT 118738 | ||||| ||||| Sbjct 417114 CGAAAATTTGCAT 417102 Score = 84.2 bits (92), Expect = 2e-11 Identities = 99/134 (74%), Gaps = 0/134 (0%) Strand=Plus/Plus Query 118606 AGATGAGACGCTGCTGATCGGGAGGTATGCCCTCCTTGTCTGTAATTTTTTGTTTAACCT 118665 |||| ||||||||||| || || || |||||||||||||| || || || || | Sbjct 415644 AGATCAGACGCTGCTGGTCAGGCGGAATGCCCTCCTTGTCCTGGATCTTGGCCTTCACGT 415703 Query 118666 GTTCGACGGTGTCCGTGCTCTCGACCTCGACGGTCACCGTTTTGCCGGTCAGAGTTTTTA 118725 |||| |||||| || ||||||||| | || | || |||||||| ||||| || | Sbjct 415704 TCTCGATGGTGTCGCTGGCCTCGACCTCCAAAGTGATGGTCTTGCCGGTGAGAGTCTTGA 415763 Query 118726 CAAAAATCTGCATG 118739 | ||||| |||||| Sbjct 415764 CGAAAATTTGCATG 415777 Score = 84.2 bits (92), Expect = 2e-11 Identities = 99/133 (74%), Gaps = 1/133 (1%) Strand=Plus/Minus Query 118606 AGATGAGACGCTGCTGATCGGGAGGTATGCCCTCCTTGTCTGTAATTTTTTGTTTAACCT 118665 |||| ||||||||||| || || || |||||||||||||| || || || || | Sbjct 417513 AGATCAGACGCTGCTGGTCAGGCGGAATGCCCTCCTTGTCCTGGATCTTGGCCTTCACGT 417454 Query 118666 GTTCGACGGTGTCCGTGCTCTCGACCTCGACGGTCACCGTTTTGCCGGTCAGAGTTTTTA 118725 |||| |||||| ||| ||||||||| | || | || |||||||| ||||| || | Sbjct 417453 TCTCGATGGTGTCGCTGC-CTCGACCTCCAAAGTGATGGTCTTGCCGGTGAGAGTCTTGA 417395 Query 118726 CAAAAATCTGCAT 118738 | ||||| ||||| Sbjct 417394 CGAAAATTTGCAT 417382 Score = 82.4 bits (90), Expect = 7e-11 Identities = 98/133 (74%), Gaps = 0/133 (0%) Strand=Plus/Minus Query 118606 AGATGAGACGCTGCTGATCGGGAGGTATGCCCTCCTTGTCTGTAATTTTTTGTTTAACCT 118665 |||| ||||||||||| || || || |||||||||||||| || || || || | Sbjct 417793 AGATCAGACGCTGCTGGTCAGGCGGAATGCCCTCCTTGTCCTGGATCTTGGCCTTCACGT 417734 Query 118666 GTTCGACGGTGTCCGTGCTCTCGACCTCGACGGTCACCGTTTTGCCGGTCAGAGTTTTTA 118725 |||| |||||| || ||||||||||| || | || |||||||| || || || | Sbjct 417733 TCTCGATGGTGTCGCTGGCCTCGACCTCGAGAGTGATGGTCTTGCCGGTGAGCGTCTTGA 417674 Query 118726 CAAAAATCTGCAT 118738 | ||||| ||||| Sbjct 417673 CGAAAATTTGCAT 417661 >seq234 Length=104851 Score = 86.0 bits (94), Expect = 5e-12 Identities = 85/110 (77%), Gaps = 0/110 (0%) Strand=Plus/Minus Query 118536 TGGATTGTAGACTCTTTTTGAATGTTGTAATCGCTCATAGTGCGCGTATCCTCGAGCTGT 118595 |||| || ||||| || || |||||||| ||| ||| || | | || ||||||||| Sbjct 49134 TGGAGAGTCGACTCCTTCTGGATGTTGTAGTCGGTCAAAGCGAGACCGTCTTCGAGCTGT 49075 Query 118596 TTTCCAGCGTAGATGAGACGCTGCTGATCGGGAGGTATGCCCTCCTTGTC 118645 ||||| ||| |||| | | |||||||||| | || |||||||||||||| Sbjct 49074 TTTCCGGCGAAGATCAAAAGCTGCTGATCAGACGGAATGCCCTCCTTGTC 49025 >seq36 Length=625759 Score = 86.0 bits (94), Expect = 5e-12 Identities = 103/140 (74%), Gaps = 0/140 (0%) Strand=Plus/Plus Query 118599 CCAGCGTAGATGAGACGCTGCTGATCGGGAGGTATGCCCTCCTTGTCTGTAATTTTTTGT 118658 || ||| |||| | |||||||||||| || || |||||||||||||| || ||| Sbjct 424990 CCGGCGAAGATCAAACGCTGCTGATCCGGCGGAATGCCCTCCTTGTCCTGGATCTTTGCC 425049 Query 118659 TTAACCTGTTCGACGGTGTCCGTGCTCTCGACCTCGACGGTCACCGTTTTGCCGGTCAGA 118718 || || | |||| |||||| || ||| ||||| | || | || |||||||| || Sbjct 425050 TTCACGTTCTCGATGGTGTCGCTGGCCTCAACCTCCAGAGTGATGGTCTTGCCGGTGAGC 425109 Query 118719 GTTTTTACAAAAATCTGCAT 118738 || || |||||||| ||||| Sbjct 425110 GTCTTGACAAAAATTTGCAT 425129 >seq703 Length=10658 Score = 82.4 bits (90), Expect = 7e-11 Identities = 84/110 (76%), Gaps = 0/110 (0%) Strand=Plus/Plus Query 118536 TGGATTGTAGACTCTTTTTGAATGTTGTAATCGCTCATAGTGCGCGTATCCTCGAGCTGT 118595 |||| || ||||| || || |||||||| ||| ||| | | | ||| || |||||| Sbjct 8172 TGGAGAGTCGACTCCTTCTGGATGTTGTAGTCGGTCAAAATATGACGATCATCAAGCTGT 8231 Query 118596 TTTCCAGCGTAGATGAGACGCTGCTGATCGGGAGGTATGCCCTCCTTGTC 118645 ||||| ||| |||| | | |||||||||| | || |||||||||||||| Sbjct 8232 TTTCCGGCGAAGATCAAAAGCTGCTGATCAGACGGAATGCCCTCCTTGTC 8281 >seq555 Length=21539 Score = 82.4 bits (90), Expect = 7e-11 Identities = 84/110 (76%), Gaps = 0/110 (0%) Strand=Plus/Plus Query 118536 TGGATTGTAGACTCTTTTTGAATGTTGTAATCGCTCATAGTGCGCGTATCCTCGAGCTGT 118595 |||| || ||||| || || |||||||| ||| ||| | | | ||| || |||||| Sbjct 4657 TGGAGAGTCGACTCCTTCTGGATGTTGTAGTCGGTCAAAATATGACGATCATCAAGCTGT 4716 Query 118596 TTTCCAGCGTAGATGAGACGCTGCTGATCGGGAGGTATGCCCTCCTTGTC 118645 ||||| ||| |||| | | |||||||||| | || |||||||||||||| Sbjct 4717 TTTCCGGCGAAGATCAAAAGCTGCTGATCAGACGGAATGCCCTCCTTGTC 4766 >seq551 Length=22149 Score = 82.4 bits (90), Expect = 7e-11 Identities = 84/110 (76%), Gaps = 0/110 (0%) Strand=Plus/Minus Query 118536 TGGATTGTAGACTCTTTTTGAATGTTGTAATCGCTCATAGTGCGCGTATCCTCGAGCTGT 118595 |||| || ||||| || || |||||||| ||| ||| | | | ||| || |||||| Sbjct 17493 TGGAGAGTCGACTCCTTCTGGATGTTGTAGTCGGTCAAAATATGACGATCATCAAGCTGT 17434 Query 118596 TTTCCAGCGTAGATGAGACGCTGCTGATCGGGAGGTATGCCCTCCTTGTC 118645 ||||| ||| |||| | | |||||||||| | || |||||||||||||| Sbjct 17433 TTTCCGGCGAAGATCAAAAGCTGCTGATCAGACGGAATGCCCTCCTTGTC 17384 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 433818524706232