Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Globodera_20ellingtonae_20[genbank_20GCA_5F001723225.1_202016-09-12] 2,246 sequences; 105,964,814 total letters Query= NC_002331.1 Length=178733 Score E Sequences producing significant alignments: (Bits) Value seq4 86.0 7e-12 seq21 82.4 9e-11 >seq4 Length=1352950 Score = 86.0 bits (94), Expect = 7e-12 Identities = 106/145 (73%), Gaps = 0/145 (0%) Strand=Plus/Minus Query 43040 CTTACCAGCGAATATGAGTCGCTGCTGGTCGGCCGGCACGCTCTCCTTGTCCATGATTTT 43099 || ||| || || || || ||||||||||| | ||| | || |||||||||| ||| || Sbjct 417804 CTGACCGGCAAAGATCAGACGCTGCTGGTCAGGCGGAATGCCCTCCTTGTCCTGGATCTT 417745 Query 43100 TTGTTTGAGCGTCGCCACCGTGTCGCTCGATTCCACATCGACCGTGATGGTTTTGCCCGT 43159 || | || | | |||||||| | || || |||| |||||||| ||||| || Sbjct 417744 GGCCTTCACGTTCTCGATGGTGTCGCTGGCCTCGACCTCGAGAGTGATGGTCTTGCCGGT 417685 Query 43160 TAGCGTCTTTACAAAGATTTGCATT 43184 |||||||| || || ||||||||| Sbjct 417684 GAGCGTCTTGACGAAAATTTGCATT 417660 >seq21 Length=750507 Score = 82.4 bits (90), Expect = 9e-11 Identities = 69/84 (82%), Gaps = 2/84 (2%) Strand=Plus/Minus Query 60057 AAAAATTTT--CTCCTCGGCAGGGAATCGAACCCTGGTCTCCCGCGTGACAGGCGGACAT 60114 |||||| || |||| ||| ||||||||||||| |||||| | ||||||||||| || Sbjct 525893 AAAAATGTTTCCTCCCAGGCCGGGAATCGAACCCGGGTCTCGCACGTGACAGGCGCGGAT 525834 Query 60115 ACTCACCACTATACTACCGAGGAT 60138 ||| |||||||||||||| |||| Sbjct 525833 ACTAACCACTATACTACCTGGGAT 525810 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 571801546220880