Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Globodera_20ellingtonae_20[genbank_20GCA_5F001723225.1_202016-09-12] 2,246 sequences; 105,964,814 total letters Query= NC_002816.1 Length=123500 Score E Sequences producing significant alignments: (Bits) Value seq62 122 7e-23 seq9 122 7e-23 seq36 86.0 5e-12 >seq62 Length=411361 Score = 122 bits (134), Expect = 7e-23 Identities = 153/210 (73%), Gaps = 0/210 (0%) Strand=Plus/Plus Query 45128 ACCAAGTGCAGCGTGCTCTCCTTCTGAATGTTGTAGTCGTTCAGTTGGCGATCGTCGTCC 45187 |||||||| || || |||||||||||||||||||||| || ||| | || || Sbjct 311299 ACCAAGTGAAGAGTAGACTCCTTCTGAATGTTGTAGTCGGCCAACGTGCGGCCATCTTCG 311358 Query 45188 AGTTGTTTTCCGGCGAATATCAACCGCTGTTGGTCGGGAGGCACACCCTCCTTGTCCGCA 45247 || ||||| ||||| || |||| ||| || || || || || | |||||||||||| Sbjct 311359 AGCTGTTTGCCGGCAAAGATCAGCCGTTGCTGATCAGGCGGGATGCCCTCCTTGTCCTGG 311418 Query 45248 ATTTTTTGCTTAACCGCCGCCACGCTGTCCCCACCCTCCACCTCCACGGTAATCGTCTTG 45307 || || ||| || | || ||||| || |||||| |||| || ||||| ||| Sbjct 311419 ATCTTCGTCTTCACGTTGTCAACTGTGTCCGAACTCTCCACGTCCAAAGTGATCGTTTTG 311478 Query 45308 CCCGTCAGAGTCTTCACAAAGATTTGCATG 45337 || ||||| |||||||| || ||||||||| Sbjct 311479 CCGGTCAGTGTCTTCACGAAAATTTGCATG 311508 >seq9 Length=1094565 Score = 122 bits (134), Expect = 7e-23 Identities = 153/210 (73%), Gaps = 0/210 (0%) Strand=Plus/Plus Query 45128 ACCAAGTGCAGCGTGCTCTCCTTCTGAATGTTGTAGTCGTTCAGTTGGCGATCGTCGTCC 45187 |||||||| || || |||||||||||||||||||||| || ||| | || || Sbjct 204390 ACCAAGTGAAGAGTAGACTCCTTCTGAATGTTGTAGTCGGCCAACGTGCGGCCATCTTCG 204449 Query 45188 AGTTGTTTTCCGGCGAATATCAACCGCTGTTGGTCGGGAGGCACACCCTCCTTGTCCGCA 45247 || ||||| ||||| || |||| ||| || || || || || | |||||||||||| Sbjct 204450 AGCTGTTTGCCGGCAAAGATCAGCCGTTGCTGATCAGGCGGGATGCCCTCCTTGTCCTGG 204509 Query 45248 ATTTTTTGCTTAACCGCCGCCACGCTGTCCCCACCCTCCACCTCCACGGTAATCGTCTTG 45307 || || ||| || | || ||||| || |||||| |||| || ||||| ||| Sbjct 204510 ATCTTCGTCTTCACGTTGTCAACTGTGTCCGAACTCTCCACGTCCAAAGTGATCGTTTTG 204569 Query 45308 CCCGTCAGAGTCTTCACAAAGATTTGCATG 45337 || ||||| |||||||| || ||||||||| Sbjct 204570 CCGGTCAGTGTCTTCACGAAAATTTGCATG 204599 >seq36 Length=625759 Score = 86.0 bits (94), Expect = 5e-12 Identities = 103/140 (74%), Gaps = 0/140 (0%) Strand=Plus/Plus Query 45197 CCGGCGAATATCAACCGCTGTTGGTCGGGAGGCACACCCTCCTTGTCCGCAATTTTTTGC 45256 |||||||| ||||| ||||| || || || || | |||||||||||| || ||| | Sbjct 424990 CCGGCGAAGATCAAACGCTGCTGATCCGGCGGAATGCCCTCCTTGTCCTGGATCTTTGCC 425049 Query 45257 TTAACCGCCGCCACGCTGTCCCCACCCTCCACCTCCACGGTAATCGTCTTGCCCGTCAGA 45316 || || | | | | |||| | |||| ||||||| || || |||||||| || || Sbjct 425050 TTCACGTTCTCGATGGTGTCGCTGGCCTCAACCTCCAGAGTGATGGTCTTGCCGGTGAGC 425109 Query 45317 GTCTTCACAAAGATTTGCAT 45336 ||||| ||||| |||||||| Sbjct 425110 GTCTTGACAAAAATTTGCAT 425129 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 395064385557166