Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Globodera_20ellingtonae_20[genbank_20GCA_5F001723225.1_202016-09-12] 2,246 sequences; 105,964,814 total letters Query= NC_003083.1 Length=118584 Score E Sequences producing significant alignments: (Bits) Value seq62 96.9 3e-15 seq9 96.9 3e-15 >seq62 Length=411361 Score = 96.9 bits (106), Expect = 3e-15 Identities = 160/229 (70%), Gaps = 4/229 (2%) Strand=Plus/Plus Query 18099 CCTCCCCGTAGTCTAAGTACCATGTGAAGTGTTGATTCTTTTTGAATGTTGTAGTCGGCC 18158 || |||| || | ||| |||| |||||| || || || || |||||||||||||||||| Sbjct 311281 CCGCCCCTGAGGCGAAGGACCAAGTGAAGAGTAGACTCCTTCTGAATGTTGTAGTCGGCC 311340 Query 18159 ATTGTTTTACAATCTTCCAATTGTTTGCCCGCATAGATAAGTCTTTGTTGATCCACGGGC 18218 | || | |||||| | |||||||| ||| |||| || | ||| ||||| || Sbjct 311341 AACGTGCGGCCATCTTCGAGCTGTTTGCCGGCAAAGATCAGCCGTTGCTGATCAGGCGGG 311400 Query 18219 ACGCCTTCCTTATC--GGCAATTTGTTGCTTGACCTGTGCAACAGTGTCACCGGGCTCGG 18276 | ||| ||||| || || || || ||| || | |||| ||||| ||| Sbjct 311401 ATGCCCTCCTTGTCCTGGATCTTCGT--CTTCACGTTGTCAACTGTGTCCGAACTCTCCA 311458 Query 18277 TTTCAATGGTGATGCTTTTGCCGGTCAATGTTTTTACAAAAATTTGCAT 18325 || | ||||| |||||||||||| ||| || || ||||||||||| Sbjct 311459 CGTCCAAAGTGATCGTTTTGCCGGTCAGTGTCTTCACGAAAATTTGCAT 311507 >seq9 Length=1094565 Score = 96.9 bits (106), Expect = 3e-15 Identities = 160/229 (70%), Gaps = 4/229 (2%) Strand=Plus/Plus Query 18099 CCTCCCCGTAGTCTAAGTACCATGTGAAGTGTTGATTCTTTTTGAATGTTGTAGTCGGCC 18158 || |||| || | ||| |||| |||||| || || || || |||||||||||||||||| Sbjct 204372 CCGCCCCTGAGGCGAAGGACCAAGTGAAGAGTAGACTCCTTCTGAATGTTGTAGTCGGCC 204431 Query 18159 ATTGTTTTACAATCTTCCAATTGTTTGCCCGCATAGATAAGTCTTTGTTGATCCACGGGC 18218 | || | |||||| | |||||||| ||| |||| || | ||| ||||| || Sbjct 204432 AACGTGCGGCCATCTTCGAGCTGTTTGCCGGCAAAGATCAGCCGTTGCTGATCAGGCGGG 204491 Query 18219 ACGCCTTCCTTATC--GGCAATTTGTTGCTTGACCTGTGCAACAGTGTCACCGGGCTCGG 18276 | ||| ||||| || || || || ||| || | |||| ||||| ||| Sbjct 204492 ATGCCCTCCTTGTCCTGGATCTTCGT--CTTCACGTTGTCAACTGTGTCCGAACTCTCCA 204549 Query 18277 TTTCAATGGTGATGCTTTTGCCGGTCAATGTTTTTACAAAAATTTGCAT 18325 || | ||||| |||||||||||| ||| || || ||||||||||| Sbjct 204550 CGTCCAAAGTGATCGTTTTGCCGGTCAGTGTCTTCACGAAAATTTGCAT 204598 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 379333616169270