Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Globodera_20ellingtonae_20[genbank_20GCA_5F001723225.1_202016-09-12] 2,246 sequences; 105,964,814 total letters Query= NC_003389.1 Length=146454 Score E Sequences producing significant alignments: (Bits) Value seq127 145 7e-30 >seq127 Length=223113 Score = 145 bits (160), Expect = 7e-30 Identities = 212/296 (72%), Gaps = 13/296 (4%) Strand=Plus/Plus Query 11678 GAAAATGTTAATCCGGGCATCAATCCTCGtttttttATCCAAAATATAGCAGCAAATGAA 11737 ||||| ||||| || ||||| | ||||||||||| | |||||| || ||| ||| | Sbjct 209120 GAAAAGGTTAACCCTGGCATTAGGCCTCGTTTTTTAAGCCAAAAGATGGCACAAAAACTA 209179 Query 11738 CCAGAAAAGAATATTCCCTCCACAGCTGCAAATGCTACTACTCTTTCTCCATAT--ACCT 11795 |||||||| || || ||||| || || ||||| || | | |||||| || | ||| Sbjct 209180 CCAGAAAAAAAGATGCCCTCTACCGCAGCAAAAGCAATAAGCCTTTCTACAAAGGAACCC 209239 Query 11796 TGTTGCTAGATATCCATTTTCTGGCCCAATCAGCTTTCTTTTTTACGCATTCCATTGTTT 11855 | ||||| ||||| |||||||| ||||| || ||| ||||| || || | Sbjct 209240 T--TGCTA---ATCCAACGCAAAGCCCAATCTGCTTTTTTACCTACCCATTCAATCGTCT 209294 Query 11856 CTATAGCGTTAAATAA---ATGCATTTTTTCTATATTATCTCTTACATATGTATCTATTA 11912 | ||||| |||||||| ||| | || | || | | ||||| || || |||| Sbjct 209295 CCATAGCATTAAATAACCGATGGCGCTCTTGTGAATCCT---TAACATAGGTGTCGATTA 209351 Query 11913 ATAAACTATACATTTCTGAATGAATATTTTCCATAGCTATTTGAAATCCATAGAAA 11968 ||||| ||| | || |||||||||||||| |||||||||||||||||||| ||| Sbjct 209352 ATAAAGAATAAGTCTCAGAATGAATATTTTCAATAGCTATTTGAAATCCATAAAAA 209407 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 468511646166240