Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Globodera_20ellingtonae_20[genbank_20GCA_5F001723225.1_202016-09-12] 2,246 sequences; 105,964,814 total letters Query= NC_003391.1 Length=205719 Score E Sequences producing significant alignments: (Bits) Value seq127 125 9e-24 >seq127 Length=223113 Score = 125 bits (138), Expect = 9e-24 Identities = 215/306 (70%), Gaps = 11/306 (4%) Strand=Plus/Plus Query 36206 GAAAACGTGAGTCCGGGCATTAGGCCACGCTTTTTAAGCCAAAATATGG-ACGCAAATGA 36264 ||||| || | || ||||||||||| || |||||||||||||| |||| || ||| | Sbjct 209120 GAAAAGGTTAACCCTGGCATTAGGCCTCGTTTTTTAAGCCAAAAGATGGCACAAAAACTA 209179 Query 36265 TCCAGAAAAGAAAATTCCTTCTACTGCCGCAAAGGCAATAAGTCTCTCTCCATAACCGGC 36324 |||||||| || || || ||||| || ||||| |||||||| || ||| || | || Sbjct 209180 -CCAGAAAAAAAGATGCCCTCTACCGCAGCAAAAGCAATAAGCCTTTCTACAAA---GGA 209235 Query 36325 ACTGTCATGTATCCACTTTTGAGCCCAATCGGCCTTCTTTTTTACACAAGGCATTGTCTC 36384 || | ||||| ||||||||| || || || ||| || || ||||| Sbjct 209236 ACCCTTGCTAATCCAACGCAAAGCCCAATCTGCTTTTTTACCTACCCATTCAATCGTCTC 209295 Query 36385 TATAGCATTAAAGA---GATAGtttttttCATTACTATCTTTAACATATGTATCAATCAA 36441 ||||||||||| | ||| | | || | | ||| |||||||| || || || || Sbjct 209296 CATAGCATTAAATAACCGATGGCGCTCTT-GTGA--ATCCTTAACATAGGTGTCGATTAA 209352 Query 36442 AAGACTATACATTTCCGAATGAATGTTTTCAATGGCCATTTGAAATCCGTAGAAACATCT 36501 | | ||| | || |||||||| |||||||| || ||||||||||| || ||| | | Sbjct 209353 TAAAGAATAAGTCTCAGAATGAATATTTTCAATAGCTATTTGAAATCCATAAAAAAACTT 209412 Query 36502 AGCCTC 36507 ||| || Sbjct 209413 AGCTTC 209418 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 658154321798640