Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Globodera_20ellingtonae_20[genbank_20GCA_5F001723225.1_202016-09-12] 2,246 sequences; 105,964,814 total letters Query= NC_003663.2 Length=224499 Score E Sequences producing significant alignments: (Bits) Value seq127 116 5e-21 >seq127 Length=223113 Score = 116 bits (128), Expect = 5e-21 Identities = 213/306 (70%), Gaps = 11/306 (4%) Strand=Plus/Plus Query 50008 GAAAACGTGAGTCCGGGCATTAGGCCACGCTTTTTAAGCCAAAATATGG-ACGCAAATGA 50066 ||||| || | || ||||||||||| || |||||||||||||| |||| || ||| | Sbjct 209120 GAAAAGGTTAACCCTGGCATTAGGCCTCGTTTTTTAAGCCAAAAGATGGCACAAAAACTA 209179 Query 50067 CCCAGAAAAGAAGATTCCTTCTACTGCGGCAAAGGCAACAAGTCTCTCTCCATAACTGGC 50126 |||||||| ||||| || ||||| || ||||| |||| ||| || ||| || | || Sbjct 209180 -CCAGAAAAAAAGATGCCCTCTACCGCAGCAAAAGCAATAAGCCTTTCTACAAA---GGA 209235 Query 50127 GCTGTCATGTATCCACTTTTGAGCCCAATCGGCCTTCTTTTTTACACAAGGCATCGTTTC 50186 | | ||||| ||||||||| || || || ||| || ||||| || Sbjct 209236 ACCCTTGCTAATCCAACGCAAAGCCCAATCTGCTTTTTTACCTACCCATTCAATCGTCTC 209295 Query 50187 TATGGCATTAAAGA---GATAGtttttttCATTACTATCTTTAACATAAGTATCGATCAA 50243 || |||||||| | ||| | | || | | ||| |||||||| || ||||| || Sbjct 209296 CATAGCATTAAATAACCGATGGCGCTCTT-GTGA--ATCCTTAACATAGGTGTCGATTAA 209352 Query 50244 AAGACTATACATTTCCGAATGAATGTTTTCAATGGCCATCTGAAATCCGTAGAAACATCT 50303 | | ||| | || |||||||| |||||||| || || |||||||| || ||| | | Sbjct 209353 TAAAGAATAAGTCTCAGAATGAATATTTTCAATAGCTATTTGAAATCCATAAAAAAACTT 209412 Query 50304 AGCCTC 50309 ||| || Sbjct 209413 AGCTTC 209418 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 718248634603440