Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Globodera_20ellingtonae_20[genbank_20GCA_5F001723225.1_202016-09-12] 2,246 sequences; 105,964,814 total letters Query= NC_004105.1 Length=209771 Score E Sequences producing significant alignments: (Bits) Value seq127 118 1e-21 >seq127 Length=223113 Score = 118 bits (130), Expect = 1e-21 Identities = 207/295 (70%), Gaps = 11/295 (4%) Strand=Plus/Plus Query 42113 GAAAACGTGAGTCCGGGCATTAGGCCACGCTTTTTAAGCCAAAATATAG-ACGCAAATGA 42171 ||||| || | || ||||||||||| || |||||||||||||| || | || ||| | Sbjct 209120 GAAAAGGTTAACCCTGGCATTAGGCCTCGTTTTTTAAGCCAAAAGATGGCACAAAAACTA 209179 Query 42172 TCCAGAAAAGAAGATTCCTTCTACTGCCGCAAAGGCAATAAGTCTCTCTCCATAACCGGC 42231 |||||||| ||||| || ||||| || ||||| |||||||| || ||| || | || Sbjct 209180 -CCAGAAAAAAAGATGCCCTCTACCGCAGCAAAAGCAATAAGCCTTTCTACAAA---GGA 209235 Query 42232 ACTGTCATGTATCCACTTTTGAGCCCAATCGGCCTTCTTTTTTACACAAGGCATCGTTTC 42291 || | ||||| ||||||||| || || || ||| || ||||| || Sbjct 209236 ACCCTTGCTAATCCAACGCAAAGCCCAATCTGCTTTTTTACCTACCCATTCAATCGTCTC 209295 Query 42292 TATGGCATTAAAGA---GATAGtttttttCATTACTATCTTTAACATATGTATCGATCAA 42348 || |||||||| | ||| | | || | | ||| |||||||| || ||||| || Sbjct 209296 CATAGCATTAAATAACCGATGGCGCTCTT-GTGA--ATCCTTAACATAGGTGTCGATTAA 209352 Query 42349 AAGACTATACATTTCTGAATGAATGTTTTCAATGGCCATCTGAAATCCGTAGAAA 42403 | | ||| | || |||||||| |||||||| || || |||||||| || ||| Sbjct 209353 TAAAGAATAAGTCTCAGAATGAATATTTTCAATAGCTATTTGAAATCCATAAAAA 209407 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 671120357766960