Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Globodera_20ellingtonae_20[genbank_20GCA_5F001723225.1_202016-09-12] 2,246 sequences; 105,964,814 total letters Query= NC_005179.1 Length=134721 Score E Sequences producing significant alignments: (Bits) Value seq127 104 2e-17 >seq127 Length=223113 Score = 104 bits (114), Expect = 2e-17 Identities = 208/309 (67%), Gaps = 6/309 (2%) Strand=Plus/Plus Query 13197 TTGAAAATGTTAGACCCGGCATAAGCCCTCGTTTTTTAATCCAAAATATAGCAGCAAACG 13256 ||||||| |||| || ||||| || ||||||||||||| |||||| || ||| ||| Sbjct 209118 TTGAAAAGGTTAACCCTGGCATTAGGCCTCGTTTTTTAAGCCAAAAGATGGCACAAAAAC 209177 Query 13257 AACCCGaaaaaaaTATTCCTTCAACTGCTGCAAACGCTATCAACCTTTCACCATACGTAC 13316 ||| |||||||| || || || || || ||||| || || | |||||| || | | || Sbjct 209178 TACCAGAAAAAAAGATGCCCTCTACCGCAGCAAAAGCAATAAGCCTTTCTACAAAGGAAC 209237 Query 13317 TATTTTTACTCTCTATCCACTTTCTGGCCCAGTTTGCTTTTTGTTTAACGCAGTTCATAT 13376 || || ||||| ||||| | |||||||| || || | || Sbjct 209238 CCTTGCTA------ATCCAACGCAAAGCCCAATCTGCTTTTTTACCTACCCATTCAATCG 209291 Query 13377 TTTCTATTGCGTTAAATAAATAAtttttttCCTTACTGTCTAAAATATAAGTATCTATCA 13436 | || || || |||||||| || || | || || ||| || || || | Sbjct 209292 TCTCCATAGCATTAAATAACCGATGGCGCTCTTGTGAATCCTTAACATAGGTGTCGATTA 209351 Query 13437 ATAAGCTATACATTTCTGAATGAATATTTTCCATCGCTATTTGGAAACCATAAAAACATC 13496 |||| ||| | || |||||||||||||| || |||||||| || ||||||||| | Sbjct 209352 ATAAAGAATAAGTCTCAGAATGAATATTTTCAATAGCTATTTGAAATCCATAAAAAAACT 209411 Query 13497 TAGCCTCTG 13505 |||| |||| Sbjct 209412 TAGCTTCTG 209420 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 430970602664892