Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Globodera_20ellingtonae_20[genbank_20GCA_5F001723225.1_202016-09-12] 2,246 sequences; 105,964,814 total letters Query= NC_005309.1 Length=359853 Score E Sequences producing significant alignments: (Bits) Value seq127 129 1e-24 >seq127 Length=223113 Score = 129 bits (142), Expect = 1e-24 Identities = 215/306 (70%), Gaps = 5/306 (2%) Strand=Plus/Minus Query 268931 CCTGAAGCCAGATGTTTTTACGGATTCCAGATAGCTATAGAAAATATTCATTCAGAGATG 268990 || ||||| | | |||||| ||||| || |||||||| |||||||||||||| |||| Sbjct 209421 CCAGAAGCTAAGTTTTTTTATGGATTTCAAATAGCTATTGAAAATATTCATTCTGAGACT 209362 Query 268991 TACAGTCTATTAATAGATACTTATATAGATGA-TAACAACGAAAAGAAAAGACTATTTTC 269049 || | ||||||| || || ||| | | || | |||| || | | ||||| Sbjct 209361 TATTCTTTATTAATCGACACCTATGTTAAGGATTCACAA-GAGCGCCATCGGTTATTTAA 209303 Query 269050 TTCTATGAGAACTATGGACTGTGTGAGaaaaaaaTCTGAATGGGCTCTGAAATGGATAAA 269109 | ||||| || || || || || | |||||| | || |||||| || ||||| | Sbjct 209302 TGCTATGGAGACGATTGAATGGGTAGGTAAAAAAGCAGATTGGGCTTTGCGTTGGATTA- 209244 Query 269110 CGATAGCGCGCCTTACGGAGAAAGGTTAGTTGCTTTTGCCGCTGTAGAAGGTATATTCTT 269169 | || | |||| | ||||||| | |||||||||| || ||||| || || || || Sbjct 209243 -GCAAGGGTTCCTT-TGTAGAAAGGCTTATTGCTTTTGCTGCGGTAGAGGGCATCTTTTT 209186 Query 269170 TTCGGGGTCTTTTGCCGCTATCTTTTGGTTGAAGAAAAGAGGCCTTATGCCAGGATTAAC 269229 ||| || |||| || ||||||||| | || ||| ||||||| |||||||| ||||| Sbjct 209185 TTCTGGTAGTTTTTGTGCCATCTTTTGGCTTAAAAAACGAGGCCTAATGCCAGGGTTAAC 209126 Query 269230 TTTCTC 269235 || || Sbjct 209125 CTTTTC 209120 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1151365266352168