Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Globodera_20ellingtonae_20[genbank_20GCA_5F001723225.1_202016-09-12] 2,246 sequences; 105,964,814 total letters Query= NC_006639.1 Length=24748 Score E Sequences producing significant alignments: (Bits) Value seq266 96.9 5e-16 seq24 93.3 7e-15 seq1 87.8 3e-13 >seq266 Length=87979 Score = 96.9 bits (106), Expect = 5e-16 Identities = 105/138 (76%), Gaps = 1/138 (1%) Strand=Plus/Plus Query 16453 TCTT-CGAGATAACATCCAAGGAATCACCAAGCCAGCTATCCGTCGTCTGGCTCGTCGTG 16511 |||| || ||||||||||| || ||||||||||| || || ||||||||||| ||||||| Sbjct 56918 TCTTGCGGGATAACATCCAGGGCATCACCAAGCCGGCCATTCGTCGTCTGGCCCGTCGTG 56977 Query 16512 GTGGAGTCAAGCGTGTCTCTGGATTGGTCTATGAAGAGATTCGTGATGTTTTGAAGATCT 16571 | || || ||||| |||| || | |||| || |||| |||| || |||| ||| Sbjct 56978 GAGGCGTTAAGCGCATCTCCGGCCTCATCTACGAGGAGACTCGTTCCGTGCTGAAAGTCT 57037 Query 16572 TCCTCAAGACCGTTATCC 16589 |||| | | ||| |||| Sbjct 57038 TCCTGGAAAACGTCATCC 57055 >seq24 Length=707015 Score = 93.3 bits (102), Expect = 7e-15 Identities = 104/138 (75%), Gaps = 1/138 (1%) Strand=Plus/Minus Query 16453 TCTT-CGAGATAACATCCAAGGAATCACCAAGCCAGCTATCCGTCGTCTGGCTCGTCGTG 16511 |||| || ||||||||||| || ||||||||||| || || ||||||||||| ||||||| Sbjct 345017 TCTTGCGGGATAACATCCAGGGCATCACCAAGCCGGCCATTCGTCGTCTGGCCCGTCGTG 344958 Query 16512 GTGGAGTCAAGCGTGTCTCTGGATTGGTCTATGAAGAGATTCGTGATGTTTTGAAGATCT 16571 | || || ||||| |||| || | |||| || || | |||| || |||| ||| Sbjct 344957 GAGGTGTTAAGCGCATCTCCGGCCTCATCTACGAGGAAACTCGTTCCGTGCTGAAAGTCT 344898 Query 16572 TCCTCAAGACCGTTATCC 16589 |||| | | ||| |||| Sbjct 344897 TCCTGGAAAACGTCATCC 344880 Score = 93.3 bits (102), Expect = 7e-15 Identities = 104/138 (75%), Gaps = 1/138 (1%) Strand=Plus/Plus Query 16453 TCTT-CGAGATAACATCCAAGGAATCACCAAGCCAGCTATCCGTCGTCTGGCTCGTCGTG 16511 |||| || ||||||||||| || ||||||||||| || || ||||||||||| ||||||| Sbjct 416966 TCTTGCGGGATAACATCCAGGGCATCACCAAGCCGGCCATTCGTCGTCTGGCCCGTCGTG 417025 Query 16512 GTGGAGTCAAGCGTGTCTCTGGATTGGTCTATGAAGAGATTCGTGATGTTTTGAAGATCT 16571 | || || ||||| |||| || | |||| || || | |||| || |||| ||| Sbjct 417026 GAGGTGTTAAGCGCATCTCCGGCCTCATCTACGAGGAAACTCGTTCCGTGCTGAAAGTCT 417085 Query 16572 TCCTCAAGACCGTTATCC 16589 |||| | | ||| |||| Sbjct 417086 TCCTGGAAAACGTCATCC 417103 >seq1 Length=2517252 Score = 87.8 bits (96), Expect = 3e-13 Identities = 103/138 (75%), Gaps = 1/138 (1%) Strand=Plus/Plus Query 16453 TCTT-CGAGATAACATCCAAGGAATCACCAAGCCAGCTATCCGTCGTCTGGCTCGTCGTG 16511 |||| || || |||||||| || ||||||||||| || || ||||||||||| ||||||| Sbjct 2460441 TCTTGCGGGACAACATCCAGGGCATCACCAAGCCGGCCATTCGTCGTCTGGCCCGTCGTG 2460500 Query 16512 GTGGAGTCAAGCGTGTCTCTGGATTGGTCTATGAAGAGATTCGTGATGTTTTGAAGATCT 16571 | || || ||||| |||| || | |||| || |||| |||| || | || ||| Sbjct 2460501 GAGGCGTTAAGCGCATCTCCGGCCTCATCTACGAGGAGACTCGTTCCGTGCTAAAAGTCT 2460560 Query 16572 TCCTCAAGACCGTTATCC 16589 |||| | | ||| |||| Sbjct 2460561 TCCTGGAAAACGTCATCC 2460578 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 79073146466478