Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Globodera_20ellingtonae_20[genbank_20GCA_5F001723225.1_202016-09-12] 2,246 sequences; 105,964,814 total letters Query= NC_006998.1 Length=194711 Score E Sequences producing significant alignments: (Bits) Value seq127 123 3e-23 >seq127 Length=223113 Score = 123 bits (136), Expect = 3e-23 Identities = 214/308 (69%), Gaps = 15/308 (5%) Strand=Plus/Plus Query 33352 GAAAACGTGAGTCCGGGCATTAGGCCACGCTTTTTAAGCCAAAATATGGAAGCGAATGAT 33411 ||||| || | || ||||||||||| || |||||||||||||| |||| | || Sbjct 209120 GAAAAGGTTAACCCTGGCATTAGGCCTCGTTTTTTAAGCCAAAAGATGGCACAAAAACTA 209179 Query 33412 CCAGAAAAGAAGATTCCTTCTACTGCAGCAAAGGCAATAAGTCTCTCTCCA---TAACCG 33468 |||||||| ||||| || ||||| |||||||| |||||||| || ||| || |||| Sbjct 209180 CCAGAAAAAAAGATGCCCTCTACCGCAGCAAAAGCAATAAGCCTTTCTACAAAGGAACCC 209239 Query 33469 GCGCTGTCATGTATCCACTTTTGAGCCCAATCGGCCTTCTTTTTTACACAAGGCATCGTT 33528 ||| ||||| ||||||||| || || || ||| || ||||| Sbjct 209240 TTGCT------AATCCAACGCAAAGCCCAATCTGCTTTTTTACCTACCCATTCAATCGTC 209293 Query 33529 TCTATGGCATTAAAGA---GATAGtttttttCATTACTATCTTTAACATAAGTATCGATC 33585 || || |||||||| | ||| | | || | | ||| |||||||| || ||||| Sbjct 209294 TCCATAGCATTAAATAACCGATGGCGCTCTT-GTGA--ATCCTTAACATAGGTGTCGATT 209350 Query 33586 AAAAGACTATACATTTCCGAATGAATGTTTTCAATGGCCATCTGAAATCCGTAGAAACAT 33645 || | | ||| | || |||||||| |||||||| || || |||||||| || ||| | Sbjct 209351 AATAAAGAATAAGTCTCAGAATGAATATTTTCAATAGCTATTTGAAATCCATAAAAAAAC 209410 Query 33646 CTAGCCTC 33653 |||| || Sbjct 209411 TTAGCTTC 209418 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 622929710757360