Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Globodera_20ellingtonae_20[genbank_20GCA_5F001723225.1_202016-09-12] 2,246 sequences; 105,964,814 total letters Query= NC_007921.1 Length=147544 Score E Sequences producing significant alignments: (Bits) Value seq4 93.3 4e-14 seq62 87.8 2e-12 seq9 87.8 2e-12 seq202 82.4 7e-11 >seq4 Length=1352950 Score = 93.3 bits (102), Expect = 4e-14 Identities = 130/180 (72%), Gaps = 2/180 (1%) Strand=Plus/Plus Query 145609 CACACAGCTATTGACGGCGATCGACGCCAAATTACAAACTGCCGTCTCCTC-GGCGTCGC 145667 |||| | | ||| | || || || ||||| || || || || ||||| || || | || Sbjct 596792 CACAAATCGATTAAGCGCAATGGAGGCCAAGTTGCACACAGCGGTCTCATCCGGTGACGA 596851 Query 145668 TGTATTGTACGATCTCGGCGCACAAATTGCTACATTTGATGGTTCCCAGATTTTGCTGAT 145727 |||| | ||| |||| ||||||||| ||||| ||||| |||| |||||||||| Sbjct 596852 A-TATTCAATGATTTCGGTGCACAAATTTGAGCATTTTATGGTGCCCAAGTTTTGCTGAT 596910 Query 145728 TACTTTTCCTGTTGCACGCGTCCTTGTAGAGCATGTACGGTCCGCCAGTCTCCACCTGCG 145787 | |||| |||||||||||||| | | ||||||||| ||| |||||| ||||| Sbjct 596911 TTGACTTCCGATTGCACGCGTCCTTAAACAACATGTACGGCGTGCCGGTCTCCGTCTGCG 596970 >seq62 Length=411361 Score = 87.8 bits (96), Expect = 2e-12 Identities = 149/216 (69%), Gaps = 0/216 (0%) Strand=Plus/Plus Query 131020 CGCAGCACTAAATGTATGGTCGACTCCTTTTGAATGTTGTAATCGCTCATGGTGCGCGAG 131079 || || || || || | || |||||||| ||||||||||| ||| || ||||| Sbjct 311293 CGAAGGACCAAGTGAAGAGTAGACTCCTTCTGAATGTTGTAGTCGGCCAACGTGCGGCCA 311352 Query 131080 TCCTCTAGCTGCTTGCCTGCGTAGATTAAACGCTGCTGGTCCGGAGGGATTCCTTCTTTG 131139 || || ||||| ||||| || |||| | || ||||| || || ||||| || || ||| Sbjct 311353 TCTTCGAGCTGTTTGCCGGCAAAGATCAGCCGTTGCTGATCAGGCGGGATGCCCTCCTTG 311412 Query 131140 TCGGTGATTTTCTGCTTGAGCTGCTCCACAGTATCGGTGGACTCGATGTCGACGGTAACG 131199 || ||| ||| ||| | | || || || || | ||| | ||| | || | Sbjct 311413 TCCTGGATCTTCGTCTTCACGTTGTCAACTGTGTCCGAACTCTCCACGTCCAAAGTGATC 311472 Query 131200 GTTTTACCGGTTAGAGTTTTTACGAAAATCTGCATG 131235 ||||| ||||| || || || |||||||| |||||| Sbjct 311473 GTTTTGCCGGTCAGTGTCTTCACGAAAATTTGCATG 311508 >seq9 Length=1094565 Score = 87.8 bits (96), Expect = 2e-12 Identities = 149/216 (69%), Gaps = 0/216 (0%) Strand=Plus/Plus Query 131020 CGCAGCACTAAATGTATGGTCGACTCCTTTTGAATGTTGTAATCGCTCATGGTGCGCGAG 131079 || || || || || | || |||||||| ||||||||||| ||| || ||||| Sbjct 204384 CGAAGGACCAAGTGAAGAGTAGACTCCTTCTGAATGTTGTAGTCGGCCAACGTGCGGCCA 204443 Query 131080 TCCTCTAGCTGCTTGCCTGCGTAGATTAAACGCTGCTGGTCCGGAGGGATTCCTTCTTTG 131139 || || ||||| ||||| || |||| | || ||||| || || ||||| || || ||| Sbjct 204444 TCTTCGAGCTGTTTGCCGGCAAAGATCAGCCGTTGCTGATCAGGCGGGATGCCCTCCTTG 204503 Query 131140 TCGGTGATTTTCTGCTTGAGCTGCTCCACAGTATCGGTGGACTCGATGTCGACGGTAACG 131199 || ||| ||| ||| | | || || || || | ||| | ||| | || | Sbjct 204504 TCCTGGATCTTCGTCTTCACGTTGTCAACTGTGTCCGAACTCTCCACGTCCAAAGTGATC 204563 Query 131200 GTTTTACCGGTTAGAGTTTTTACGAAAATCTGCATG 131235 ||||| ||||| || || || |||||||| |||||| Sbjct 204564 GTTTTGCCGGTCAGTGTCTTCACGAAAATTTGCATG 204599 >seq202 Length=131032 Score = 82.4 bits (90), Expect = 7e-11 Identities = 161/237 (68%), Gaps = 1/237 (0%) Strand=Plus/Plus Query 131008 CCACCGCGCAAACGCAGCACTAAATGTATGGTCGACTCCTTTTGAATGTTGTAATCGCTC 131067 || |||| ||| |||| | || ||| | | | |||||||||||||||||||| ||| | Sbjct 51378 CCTCCGCACAACCGCAACGTTAGATGGAGGTTAGACTCCTTTTGAATGTTGTAGTCGGCC 51437 Query 131068 ATGGTGCGCGAGTCCTCTAGCTGCTTGCCTGCGTAGATTAAACGCTGCTGGTCCGGAGGG 131127 | | ||| | ||| || | ||| || || || | || | || || || ||||| | Sbjct 51438 ACGCTGCACATGTCGTCCAACTGTTTCCCCGCAAATATCAGTCGTTGTTGCTCCGGCCGA 51497 Query 131128 ATTCCTTCTTTGTCGGTGATTTTCTGCTTGAGCTGCTCCACAGTATCGGTGGACTCGATG 131187 || || |||||||| |||||| ||| | | | | | ||| | ||| ||| | Sbjct 51498 ATCCCCTCTTTGTCATGGATTTTGGTCTTCACGTTCGCGATAGTGCCACTGGTCTCAACC 51557 Query 131188 TCGACGGTAACGGTTTTACCGGTTAGAGTTTTTACGAAAATCTGCATGACTTATTTT 131244 | | || | ||| || ||||| | ||| |||||||| ||||| | | ||||||| Sbjct 51558 TTCAGAGTGATGGTCTTCCCGGTGAAAGTCTTTACGAATATCTGTGTCA-TTATTTT 51613 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 471999548240640