Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Globodera_20ellingtonae_20[genbank_20GCA_5F001723225.1_202016-09-12] 2,246 sequences; 105,964,814 total letters Query= NC_008168.1 Length=104710 Score E Sequences producing significant alignments: (Bits) Value seq855 102 5e-17 seq32 89.7 3e-13 seq38 86.0 4e-12 >seq855 Length=6882 Score = 102 bits (112), Expect = 5e-17 Identities = 70/79 (89%), Gaps = 5/79 (6%) Strand=Plus/Minus Query 25902 AAGCCCGTTCCCTTGGCTGTGGTTTCGCTAGATAGTAGATAGGG-----GGTAATCTCGT 25956 |||||||||||||||||||||||||||||||||||||||||||| || |||||||| Sbjct 6341 AAGCCCGTTCCCTTGGCTGTGGTTTCGCTAGATAGTAGATAGGGACAGTGGGAATCTCGT 6282 Query 25957 TAATCCTTTCATGCGCGTC 25975 | |||| ||| |||||||| Sbjct 6281 TGATCCATTCGTGCGCGTC 6263 >seq32 Length=600051 Score = 89.7 bits (98), Expect = 3e-13 Identities = 151/216 (70%), Gaps = 2/216 (1%) Strand=Plus/Plus Query 38103 CGCAACACCAAATGAAG-AGTGCTCTCCTTTTGAATATTGTAATCAGACAAAACACGTTC 38161 |||| || || |||||| | ||| ||||||||||| ||||| |||| |||| | || Sbjct 414355 CGCAGCAGCAGATGAAGCATTGCG-TCCTTTTGAATGTTGTAGTCAGCCAAAGTGCCATC 414413 Query 38162 GTCGTCTAATTGTTTTCCGGCAAATATTAGGCGTTGTTGATCGGAGGGGACGCCTTCTTT 38221 || || | ||||| || ||||| || || ||||| || | | |||| |||||| | Sbjct 414414 ATCATCGAGCTGTTTGCCCGCAAAGATCAGTCGTTGCTGTTTAGTTGGGATGCCTTCCAT 414473 Query 38222 GTCCATAATTTTTTGCTTCACATTCTGGACAGTATCTCCACTTTCAACTTCTAATGTAAT 38281 | || | ||| || |||||||| | || || || || | || || | || || Sbjct 414474 GGCCTGGACTTTCTGTTTCACATTGTTGATGGTGTCCGAGCTGTGCACCTCCAGCGTCAT 414533 Query 38282 AGTTTTACCCGTCAAGGTTTTCACGAATATCTGCAT 38317 | ||| |||||||| |||||||| || || ||||| Sbjct 414534 GGCTTTTCCCGTCAAAGTTTTCACAAAAATTTGCAT 414569 >seq38 Length=464492 Score = 86.0 bits (94), Expect = 4e-12 Identities = 94/125 (75%), Gaps = 0/125 (0%) Strand=Plus/Minus Query 6174 AACGTAAATCGTAATGTGGCGGACGCGTTCTACCGCTACAAAATGCCGCGCATCTGCGCC 6233 ||||| || ||| |||| || |||| || |||||||||||||| ||||| | || Sbjct 427254 AACGTTAACCGTGGTGTGCATGATCCGTTTTATCGCTACAAAATGCCTCGCATTTTGGCA 427195 Query 6234 AAGGTCGAGGGTAAGGGAAACGGTATTAAAACCGTCATTGTCAACATGCCTGAAGTCGCT 6293 || ||||| || |||||||| |||||||| || || || | || ||| | || ||||| Sbjct 427194 AAAGTCGAAGGCAAGGGAAATGGTATTAAGACTGTTATCGCAAATATGTCCGACGTCGCG 427135 Query 6294 AAGGC 6298 ||||| Sbjct 427134 AAGGC 427130 Score = 86.0 bits (94), Expect = 4e-12 Identities = 94/125 (75%), Gaps = 0/125 (0%) Strand=Plus/Plus Query 6174 AACGTAAATCGTAATGTGGCGGACGCGTTCTACCGCTACAAAATGCCGCGCATCTGCGCC 6233 ||||| || ||| |||| || |||| || |||||||||||||| ||||| | || Sbjct 428555 AACGTTAACCGTGGTGTGCATGATCCGTTTTATCGCTACAAAATGCCTCGCATTTTGGCA 428614 Query 6234 AAGGTCGAGGGTAAGGGAAACGGTATTAAAACCGTCATTGTCAACATGCCTGAAGTCGCT 6293 || ||||| || |||||||| |||||||| || || || | || ||| | || ||||| Sbjct 428615 AAAGTCGAAGGCAAGGGAAATGGTATTAAGACTGTTATCGCAAATATGTCCGACGTCGCG 428674 Query 6294 AAGGC 6298 ||||| Sbjct 428675 AAGGC 428679 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 334938031448426