Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Globodera_20ellingtonae_20[genbank_20GCA_5F001723225.1_202016-09-12] 2,246 sequences; 105,964,814 total letters Query= NC_008291.1 Length=198050 Score E Sequences producing significant alignments: (Bits) Value seq127 118 1e-21 >seq127 Length=223113 Score = 118 bits (130), Expect = 1e-21 Identities = 208/297 (70%), Gaps = 17/297 (6%) Strand=Plus/Plus Query 32709 GAAAACGTGAGTCCGGGCATTAGGCCACGCTTTTTAAGCCAAAATATGG-ACGCAAATGA 32767 ||||| || | || ||||||||||| || |||||||||||||| |||| || ||| | Sbjct 209120 GAAAAGGTTAACCCTGGCATTAGGCCTCGTTTTTTAAGCCAAAAGATGGCACAAAAACTA 209179 Query 32768 TCCAGAAAAGAAAATTCCTTCTACTGCCGCAAAGGCAATAAGTCTCTCTCCA---TAACC 32824 |||||||| || || || ||||| || ||||| |||||||| || ||| || |||| Sbjct 209180 -CCAGAAAAAAAGATGCCCTCTACCGCAGCAAAAGCAATAAGCCTTTCTACAAAGGAACC 209238 Query 32825 GGCGCTGTCATGTATCCACTTTTGAGCCCAATCGGCCTTCTTTTTTACACAAGGCATTGT 32884 ||| ||||| ||||||||| || || || ||| || || || Sbjct 209239 CTTGCT------AATCCAACGCAAAGCCCAATCTGCTTTTTTACCTACCCATTCAATCGT 209292 Query 32885 CTCTATAGCATTAAAGA---GATAGtttttttCATTACTATCTTTAACATATGTATCAAT 32941 ||| ||||||||||| | ||| | | || | | ||| |||||||| || || || Sbjct 209293 CTCCATAGCATTAAATAACCGATGGCGCTCTT-GTGA--ATCCTTAACATAGGTGTCGAT 209349 Query 32942 CAAAAGACTATACATTTCCGAATGAATGTTTTCAATGGCCATTTGAAATCCGTAGAA 32998 || | | ||| | || |||||||| |||||||| || ||||||||||| || || Sbjct 209350 TAATAAAGAATAAGTCTCAGAATGAATATTTTCAATAGCTATTTGAAATCCATAAAA 209406 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 633614210781600