Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Globodera_20ellingtonae_20[genbank_20GCA_5F001723225.1_202016-09-12] 2,246 sequences; 105,964,814 total letters Query= NC_008293.1 Length=135454 Score E Sequences producing significant alignments: (Bits) Value seq62 107 2e-18 seq9 107 2e-18 seq202 102 7e-17 >seq62 Length=411361 Score = 107 bits (118), Expect = 2e-18 Identities = 151/212 (71%), Gaps = 0/212 (0%) Strand=Plus/Minus Query 24999 ATGCAAATATTTGTAAAGACTTTGACCGGTAAATCCATCACAGTCGAAGTGGAGTCGTCT 25058 |||||||| || || ||||| ||||||| ||| | ||||| | || |||||| || Sbjct 311507 ATGCAAATTTTCGTGAAGACACTGACCGGCAAAACGATCACTTTGGACGTGGAGAGTTCG 311448 Query 25059 GACACTATCGAGTCACTGAAGCAAAAAATCACTGACAAAGAAGGGATTCCACCTGACCAA 25118 ||||| | || ||||| || ||| ||||| || || || || ||||| || Sbjct 311447 GACACAGTTGACAACGTGAAGACGAAGATCCAGGACAAGGAGGGCATCCCGCCTGATCAG 311388 Query 25119 CAGCGGATTATTTTTGCCGGCAAACAATTAGAAGATGATCGCACTGTGGGCGATTACAAT 25178 || ||| | || |||||||||||||| | ||||||| ||||| ||| ||| ||||| Sbjct 311387 CAACGGCTGATCTTTGCCGGCAAACAGCTCGAAGATGGCCGCACGTTGGCCGACTACAAC 311328 Query 25179 ATTCAAAAAGAATCCACGCTACATTTAGTGCT 25210 ||||| || || || || || || || || || Sbjct 311327 ATTCAGAAGGAGTCTACTCTTCACTTGGTCCT 311296 >seq9 Length=1094565 Score = 107 bits (118), Expect = 2e-18 Identities = 151/212 (71%), Gaps = 0/212 (0%) Strand=Plus/Minus Query 24999 ATGCAAATATTTGTAAAGACTTTGACCGGTAAATCCATCACAGTCGAAGTGGAGTCGTCT 25058 |||||||| || || ||||| ||||||| ||| | ||||| | || |||||| || Sbjct 204598 ATGCAAATTTTCGTGAAGACACTGACCGGCAAAACGATCACTTTGGACGTGGAGAGTTCG 204539 Query 25059 GACACTATCGAGTCACTGAAGCAAAAAATCACTGACAAAGAAGGGATTCCACCTGACCAA 25118 ||||| | || ||||| || ||| ||||| || || || || ||||| || Sbjct 204538 GACACAGTTGACAACGTGAAGACGAAGATCCAGGACAAGGAGGGCATCCCGCCTGATCAG 204479 Query 25119 CAGCGGATTATTTTTGCCGGCAAACAATTAGAAGATGATCGCACTGTGGGCGATTACAAT 25178 || ||| | || |||||||||||||| | ||||||| ||||| ||| ||| ||||| Sbjct 204478 CAACGGCTGATCTTTGCCGGCAAACAGCTCGAAGATGGCCGCACGTTGGCCGACTACAAC 204419 Query 25179 ATTCAAAAAGAATCCACGCTACATTTAGTGCT 25210 ||||| || || || || || || || || || Sbjct 204418 ATTCAGAAGGAGTCTACTCTTCACTTGGTCCT 204387 >seq202 Length=131032 Score = 102 bits (112), Expect = 7e-17 Identities = 145/204 (71%), Gaps = 0/204 (0%) Strand=Plus/Minus Query 25002 CAAATATTTGTAAAGACTTTGACCGGTAAATCCATCACAGTCGAAGTGGAGTCGTCTGAC 25061 || ||||| ||||||||||| ||||| || ||||||| | | || ||| | || | Sbjct 51601 CAGATATTCGTAAAGACTTTCACCGGGAAGACCATCACTCTGAAGGTTGAGACCAGTGGC 51542 Query 25062 ACTATCGAGTCACTGAAGCAAAAAATCACTGACAAAGAAGGGATTCCACCTGACCAACAG 25121 ||||||| | ||||| |||||| ||||||||| ||||||| || || ||||| Sbjct 51541 ACTATCGCGAACGTGAAGACCAAAATCCATGACAAAGAGGGGATTCGGCCGGAGCAACAA 51482 Query 25122 CGGATTATTTTTGCCGGCAAACAATTAGAAGATGATCGCACTGTGGGCGATTACAATATT 25181 || | || ||||| || ||||| || || || ||| |||| ||| ||||| ||| Sbjct 51481 CGACTGATATTTGCGGGGAAACAGTTGGACGACATGTGCAGCGTGGCCGACTACAACATT 51422 Query 25182 CAAAAAGAATCCACGCTACATTTA 25205 ||||| || || | || ||| || Sbjct 51421 CAAAAGGAGTCTAACCTCCATCTA 51398 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 433316138458490