Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Globodera_20ellingtonae_20[genbank_20GCA_5F001723225.1_202016-09-12] 2,246 sequences; 105,964,814 total letters Query= NC_008518.1 Length=174059 Score E Sequences producing significant alignments: (Bits) Value seq127 132 5e-26 >seq127 Length=223113 Score = 132 bits (146), Expect = 5e-26 Identities = 214/306 (70%), Gaps = 14/306 (5%) Strand=Plus/Plus Query 93143 AATGTTAAACCTGGTAACAGTCCTCGTTTCTTGAGCCAAAATATTGAAGCAAAACTACCA 93202 || ||||| ||||| | || |||||||| || |||||||| || | | |||||||||| Sbjct 209123 AAGGTTAACCCTGGCATTAGGCCTCGTTTTTTAAGCCAAAAGATGGCACAAAAACTACCA 209182 Query 93203 GaaaaaaaTATACCTTCCACGGCTGCAAATGCCACAATACGTTCGGCAAAATTTGCGGAA 93262 |||||||| || || || || || ||||| || | || | ||| |||| |||| Sbjct 209183 GAAAAAAAGATGCCCTCTACCGCAGCAAAAGCAATAAGCCTTTCTACAAA------GGAA 209236 Query 93263 TTACTGCTGATCCATTTTAAAGCCCAATCGGCTTTTTT-CTTA---ATACAAGGTAGTGT 93318 |||| ||||| ||||||||||| |||||||| | || || || | || Sbjct 209237 CCCTTGCTAATCCAACGCAAAGCCCAATCTGCTTTTTTACCTACCCATTCA----ATCGT 209292 Query 93319 TTCGATAGCGTTAAATAGGTAATCTCGCTCGTCCGAATCTCGTATGTATGTATCGATTAA 93378 || ||||| ||||||| || ||||| | ||||| | || || |||||||| Sbjct 209293 CTCCATAGCATTAAATAACCGATGGCGCTCTTGTGAATCCTTAACATAGGTGTCGATTAA 209352 Query 93379 CAGAGAATACATTTCAGAATGGACATTCTCCATTGCAATTTGGAATCCGTAGAAACATCT 93438 | |||||| | |||||||| | ||| || || || ||||| ||||| || ||| | | Sbjct 209353 TAAAGAATAAGTCTCAGAATGAATATTTTCAATAGCTATTTGAAATCCATAAAAAAACTT 209412 Query 93439 AGCTTC 93444 |||||| Sbjct 209413 AGCTTC 209418 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 556845166133040