Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Globodera_20ellingtonae_20[genbank_20GCA_5F001723225.1_202016-09-12] 2,246 sequences; 105,964,814 total letters Query= NC_008586.1 Length=131204 Score E Sequences producing significant alignments: (Bits) Value seq62 122 7e-23 seq9 122 7e-23 seq202 107 2e-18 seq32 102 7e-17 seq36 86.0 5e-12 seq4 82.4 6e-11 >seq62 Length=411361 Score = 122 bits (134), Expect = 7e-23 Identities = 145/197 (74%), Gaps = 0/197 (0%) Strand=Plus/Minus Query 22219 ATGCAAATTTTTGTTAAAACTTTAACCGGTAAAACGGTCACTCTTGAAGTGGAAACCACC 22278 ||||||||||| || || || | ||||| |||||| ||||| | || ||||| | | Sbjct 311507 ATGCAAATTTTCGTGAAGACACTGACCGGCAAAACGATCACTTTGGACGTGGAGAGTTCG 311448 Query 22279 GATACCGTGGACGATATCAAACAAAAAATTCAAGACAAGGAGGGTATTCCACCCGATCAA 22338 || || || ||| | | || || || || ||||||||||| || || || ||||| Sbjct 311447 GACACAGTTGACAACGTGAAGACGAAGATCCAGGACAAGGAGGGCATCCCGCCTGATCAG 311388 Query 22339 CAACGTCTTATATTTGCCGGCAAACAGTTAGAGGATCACCGCACCGTCTCCGATTACAAC 22398 ||||| || || ||||||||||||||| | || ||| |||||| | |||| |||||| Sbjct 311387 CAACGGCTGATCTTTGCCGGCAAACAGCTCGAAGATGGCCGCACGTTGGCCGACTACAAC 311328 Query 22399 ATTCAAAAAGAATCCAC 22415 ||||| || || || || Sbjct 311327 ATTCAGAAGGAGTCTAC 311311 >seq9 Length=1094565 Score = 122 bits (134), Expect = 7e-23 Identities = 145/197 (74%), Gaps = 0/197 (0%) Strand=Plus/Minus Query 22219 ATGCAAATTTTTGTTAAAACTTTAACCGGTAAAACGGTCACTCTTGAAGTGGAAACCACC 22278 ||||||||||| || || || | ||||| |||||| ||||| | || ||||| | | Sbjct 204598 ATGCAAATTTTCGTGAAGACACTGACCGGCAAAACGATCACTTTGGACGTGGAGAGTTCG 204539 Query 22279 GATACCGTGGACGATATCAAACAAAAAATTCAAGACAAGGAGGGTATTCCACCCGATCAA 22338 || || || ||| | | || || || || ||||||||||| || || || ||||| Sbjct 204538 GACACAGTTGACAACGTGAAGACGAAGATCCAGGACAAGGAGGGCATCCCGCCTGATCAG 204479 Query 22339 CAACGTCTTATATTTGCCGGCAAACAGTTAGAGGATCACCGCACCGTCTCCGATTACAAC 22398 ||||| || || ||||||||||||||| | || ||| |||||| | |||| |||||| Sbjct 204478 CAACGGCTGATCTTTGCCGGCAAACAGCTCGAAGATGGCCGCACGTTGGCCGACTACAAC 204419 Query 22399 ATTCAAAAAGAATCCAC 22415 ||||| || || || || Sbjct 204418 ATTCAGAAGGAGTCTAC 204402 >seq202 Length=131032 Score = 107 bits (118), Expect = 2e-18 Identities = 167/236 (71%), Gaps = 6/236 (3%) Strand=Plus/Minus Query 22214 TAAAGATGCAAATTTTTGTTAAAACTTTAACCGGTAAAACGGTCACTCTTGAAGTGGAAA 22273 ||| || || || || || || ||||| ||||| || || ||||||| | || || | Sbjct 51609 TAATGACACAGATATTCGTAAAGACTTTCACCGGGAAGACCATCACTCTGAAGGTTGAGA 51550 Query 22274 CCACCGATAC---CGTGGACGATATCAAACAAAAAATTCAAGACAAGGAGGGTATTCCAC 22330 ||| | || || | ||| | | || |||| | || ||||| ||||| |||| | Sbjct 51549 CCAGTGGCACTATCGCGAACGTGA--AGACCAAAA-TCCATGACAAAGAGGGGATTCGGC 51493 Query 22331 CCGATCAACAACGTCTTATATTTGCCGGCAAACAGTTAGAGGATCACCGCACCGTCTCCG 22390 | || |||||||| || |||||||| || |||||||| || || ||| ||| ||| Sbjct 51492 CGGAGCAACAACGACTGATATTTGCGGGGAAACAGTTGGACGACATGTGCAGCGTGGCCG 51433 Query 22391 ATTACAACATTCAAAAAGAATCCACCATACATTTAGTTTTGCGATTGCGCGGAGGT 22446 | |||||||||||||| || || | | | ||| || ||||| ||| |||||||| Sbjct 51432 ACTACAACATTCAAAAGGAGTCTAACCTCCATCTAACGTTGCGGTTGTGCGGAGGT 51377 >seq32 Length=600051 Score = 102 bits (112), Expect = 7e-17 Identities = 137/191 (72%), Gaps = 0/191 (0%) Strand=Plus/Minus Query 22219 ATGCAAATTTTTGTTAAAACTTTAACCGGTAAAACGGTCACTCTTGAAGTGGAAACCACC 22278 |||||||||||||| |||||||| || || ||| | | || || || ||| | | | | Sbjct 414569 ATGCAAATTTTTGTGAAAACTTTGACGGGAAAAGCCATGACGCTGGAGGTGCACAGCTCG 414510 Query 22279 GATACCGTGGACGATATCAAACAAAAAATTCAAGACAAGGAGGGTATTCCACCCGATCAA 22338 || ||| | || || | ||||| ||| | || | || ||| || || ||| | | || Sbjct 414509 GACACCATCAACAATGTGAAACAGAAAGTCCAGGCCATGGAAGGCATCCCAACTAAACAG 414450 Query 22339 CAACGTCTTATATTTGCCGGCAAACAGTTAGAGGATCACCGCACCGTCTCCGATTACAAC 22398 ||||| || || ||||| ||||||||| | || ||| | |||| | | || |||||| Sbjct 414449 CAACGACTGATCTTTGCGGGCAAACAGCTCGATGATGATGGCACTTTGGCTGACTACAAC 414390 Query 22399 ATTCAAAAAGA 22409 |||||||| || Sbjct 414389 ATTCAAAAGGA 414379 >seq36 Length=625759 Score = 86.0 bits (94), Expect = 5e-12 Identities = 103/140 (74%), Gaps = 0/140 (0%) Strand=Plus/Minus Query 22219 ATGCAAATTTTTGTTAAAACTTTAACCGGTAAAACGGTCACTCTTGAAGTGGAAACCACC 22278 |||||||||||||| || || | ||||| || || ||||||| || || || ||| | Sbjct 424856 ATGCAAATTTTTGTCAAGACGCTCACCGGAAAGACCATCACTCTGGAGGTTGAGGCCAGC 424797 Query 22279 GATACCGTGGACGATATCAAACAAAAAATTCAAGACAAGGAGGGTATTCCACCCGATCAA 22338 || ||| | || | | || ||| || || ||||||||||| ||||| || ||||| Sbjct 424796 GACACCATCGAGAACGTGAAGGCAAAGATCCAGGACAAGGAGGGCATTCCGCCGGATCAG 424737 Query 22339 CAACGTCTTATATTTGCCGG 22358 || ||| | || |||||||| Sbjct 424736 CAGCGTTTGATCTTTGCCGG 424717 Score = 82.4 bits (90), Expect = 6e-11 Identities = 102/140 (73%), Gaps = 0/140 (0%) Strand=Plus/Minus Query 22219 ATGCAAATTTTTGTTAAAACTTTAACCGGTAAAACGGTCACTCTTGAAGTGGAAACCACC 22278 |||||||||||||| || || | ||||| || || ||||||| || || || ||| | Sbjct 425129 ATGCAAATTTTTGTCAAGACGCTCACCGGCAAGACCATCACTCTGGAGGTTGAGGCCAGC 425070 Query 22279 GATACCGTGGACGATATCAAACAAAAAATTCAAGACAAGGAGGGTATTCCACCCGATCAA 22338 || ||| | || | | || ||| || || ||||||||||| ||||| || ||||| Sbjct 425069 GACACCATCGAGAACGTGAAGGCAAAGATCCAGGACAAGGAGGGCATTCCGCCGGATCAG 425010 Query 22339 CAACGTCTTATATTTGCCGG 22358 || ||| | || || ||||| Sbjct 425009 CAGCGTTTGATCTTCGCCGG 424990 >seq4 Length=1352950 Score = 82.4 bits (90), Expect = 6e-11 Identities = 102/140 (73%), Gaps = 0/140 (0%) Strand=Plus/Plus Query 22219 ATGCAAATTTTTGTTAAAACTTTAACCGGTAAAACGGTCACTCTTGAAGTGGAAACCACC 22278 ||||||||||| || || ||| | ||||| || || ||||| | || || || ||| | Sbjct 416455 ATGCAAATTTTCGTCAAGACTCTCACCGGCAAGACCATCACTTTGGAGGTCGAGGCCAGC 416514 Query 22279 GATACCGTGGACGATATCAAACAAAAAATTCAAGACAAGGAGGGTATTCCACCCGATCAA 22338 |||||| | || | | || || || || ||||||||||| ||||| || || || Sbjct 416515 GATACCATCGAGAACGTGAAGGCCAAGATCCAGGACAAGGAGGGCATTCCGCCTGACCAG 416574 Query 22339 CAACGTCTTATATTTGCCGG 22358 || ||||| || |||||||| Sbjct 416575 CAGCGTCTGATCTTTGCCGG 416594 Score = 82.4 bits (90), Expect = 6e-11 Identities = 102/140 (73%), Gaps = 0/140 (0%) Strand=Plus/Plus Query 22219 ATGCAAATTTTTGTTAAAACTTTAACCGGTAAAACGGTCACTCTTGAAGTGGAAACCACC 22278 ||||||||||| || || ||| | ||||| || || ||||| | || || || ||| | Sbjct 417102 ATGCAAATTTTCGTCAAGACTCTCACCGGCAAGACCATCACTTTGGAGGTCGAGGCCAGC 417161 Query 22279 GATACCGTGGACGATATCAAACAAAAAATTCAAGACAAGGAGGGTATTCCACCCGATCAA 22338 || ||| | || | | || || || || ||||||||||| ||||| || ||||| Sbjct 417162 GACACCATCGAGAACGTGAAGGCCAAGATCCAGGACAAGGAGGGCATTCCGCCTGATCAG 417221 Query 22339 CAACGTCTTATATTTGCCGG 22358 || ||||| || |||||||| Sbjct 417222 CAGCGTCTGATCTTTGCCGG 417241 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 419716510732990