Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Globodera_20ellingtonae_20[genbank_20GCA_5F001723225.1_202016-09-12] 2,246 sequences; 105,964,814 total letters Query= NC_008724.1 Length=288047 Score E Sequences producing significant alignments: (Bits) Value seq4 125 1e-23 seq36 109 1e-18 seq202 96.9 6e-15 seq19 87.8 3e-12 seq98 84.2 4e-11 >seq4 Length=1352950 Score = 125 bits (138), Expect = 1e-23 Identities = 113/141 (80%), Gaps = 1/141 (1%) Strand=Plus/Minus Query 68322 CCGGCGAATATGAGTCTTTGTTGGTCGGGTGGAATGCCTTCCTTGTCTTGAATCTTTGCC 68381 ||||| || || || | || ||||| || |||||||| |||||||| || ||||| ||| Sbjct 417520 CCGGCAAAGATCAGACGCTGCTGGTCAGGCGGAATGCCCTCCTTGTCCTGGATCTTGGCC 417461 Query 68382 TTGACGGCCTCGATGGTGTCTGCTGATTCTACTTCCAAGGTGATGGTTTTTCCCGTGAGG 68441 || ||| |||||||||||| |||| || || ||||| |||||||| || || ||||| Sbjct 417460 TTCACGTTCTCGATGGTGTC-GCTGCCTCGACCTCCAAAGTGATGGTCTTGCCGGTGAGA 417402 Query 68442 GTCTTGACGAATATCTGCATT 68462 ||||||||||| || |||||| Sbjct 417401 GTCTTGACGAAAATTTGCATT 417381 Score = 120 bits (132), Expect = 6e-22 Identities = 115/145 (79%), Gaps = 2/145 (1%) Strand=Plus/Plus Query 68322 CCGGCGAATATGAGTCTTTGTTGGTCGGGTGGAATGCCTTCCTTGTCTTGAATCTTTGCC 68381 ||||| || || || | || ||||| || |||||||| |||||||| || ||||| ||| Sbjct 415637 CCGGCAAAGATCAGACGCTGCTGGTCAGGCGGAATGCCCTCCTTGTCCTGGATCTTGGCC 415696 Query 68382 TTGACGGCCTCGATGGTGTCTGCT-GATTCTACTTCCAAGGTGATGGTTTTTCCCGTGAG 68440 || ||| |||||||||||| ||| | || || ||||| |||||||| || || ||||| Sbjct 415697 TTCACGTTCTCGATGGTGTC-GCTGGCCTCGACCTCCAAAGTGATGGTCTTGCCGGTGAG 415755 Query 68441 GGTCTTGACGAATATCTGCATTATG 68465 ||||||||||| || ||||| ||| Sbjct 415756 AGTCTTGACGAAAATTTGCATGATG 415780 Score = 114 bits (126), Expect = 2e-20 Identities = 114/145 (79%), Gaps = 2/145 (1%) Strand=Plus/Minus Query 68322 CCGGCGAATATGAGTCTTTGTTGGTCGGGTGGAATGCCTTCCTTGTCTTGAATCTTTGCC 68381 ||||| || || || | || ||||| || |||||||| |||||||| || ||||| ||| Sbjct 416594 CCGGCAAAGATCAGACGCTGCTGGTCAGGCGGAATGCCCTCCTTGTCCTGGATCTTGGCC 416535 Query 68382 TTGACGGCCTCGATGGTGTCTGCTGAT-TCTACTTCCAAGGTGATGGTTTTTCCCGTGAG 68440 || ||| ||||||||| || |||| || || ||||| |||||||| || || ||||| Sbjct 416534 TTCACGTTCTCGATGGTATC-GCTGGCCTCGACCTCCAAAGTGATGGTCTTGCCGGTGAG 416476 Query 68441 GGTCTTGACGAATATCTGCATTATG 68465 ||||||||||| || ||||| ||| Sbjct 416475 AGTCTTGACGAAAATTTGCATGATG 416451 Score = 114 bits (126), Expect = 2e-20 Identities = 112/142 (79%), Gaps = 2/142 (1%) Strand=Plus/Minus Query 68322 CCGGCGAATATGAGTCTTTGTTGGTCGGGTGGAATGCCTTCCTTGTCTTGAATCTTTGCC 68381 ||||| || || || | || || || || |||||||| |||||||| || ||||| ||| Sbjct 417241 CCGGCAAAGATCAGACGCTGCTGATCAGGCGGAATGCCCTCCTTGTCCTGGATCTTGGCC 417182 Query 68382 TTGACGGCCTCGATGGTGTCTGCTGAT-TCTACTTCCAAGGTGATGGTTTTTCCCGTGAG 68440 || ||| |||||||||||| |||| || || ||||| |||||||| || || ||||| Sbjct 417181 TTCACGTTCTCGATGGTGTC-GCTGGCCTCGACCTCCAAAGTGATGGTCTTGCCGGTGAG 417123 Query 68441 GGTCTTGACGAATATCTGCATT 68462 ||||||||||| || |||||| Sbjct 417122 AGTCTTGACGAAAATTTGCATT 417101 Score = 109 bits (120), Expect = 1e-18 Identities = 111/142 (78%), Gaps = 2/142 (1%) Strand=Plus/Minus Query 68322 CCGGCGAATATGAGTCTTTGTTGGTCGGGTGGAATGCCTTCCTTGTCTTGAATCTTTGCC 68381 ||||| || || || | || ||||| || |||||||| |||||||| || ||||| ||| Sbjct 417800 CCGGCAAAGATCAGACGCTGCTGGTCAGGCGGAATGCCCTCCTTGTCCTGGATCTTGGCC 417741 Query 68382 TTGACGGCCTCGATGGTGTCTGCTGAT-TCTACTTCCAAGGTGATGGTTTTTCCCGTGAG 68440 || ||| |||||||||||| |||| || || || | |||||||| || || ||||| Sbjct 417740 TTCACGTTCTCGATGGTGTC-GCTGGCCTCGACCTCGAGAGTGATGGTCTTGCCGGTGAG 417682 Query 68441 GGTCTTGACGAATATCTGCATT 68462 ||||||||||| || |||||| Sbjct 417681 CGTCTTGACGAAAATTTGCATT 417660 Score = 100 bits (110), Expect = 5e-16 Identities = 103/132 (78%), Gaps = 2/132 (2%) Strand=Plus/Minus Query 68322 CCGGCGAATATGAGTCTTTGTTGGTCGGGTGGAATGCCTTCCTTGTCTTGAATCTTTGCC 68381 ||||| || || || | || || || || |||||||| |||||||| || ||||| ||| Sbjct 416958 CCGGCAAAGATCAGACGCTGCTGATCAGGCGGAATGCCCTCCTTGTCCTGGATCTTGGCC 416899 Query 68382 TTGACGGCCTCGATGGTGTCTGCTGAT-TCTACTTCCAAGGTGATGGTTTTTCCCGTGAG 68440 || ||| ||||||||| || |||| || || ||||| |||||||| || || ||||| Sbjct 416898 TTCACGTTCTCGATGGTATC-GCTGGCCTCGACCTCCAAAGTGATGGTCTTGCCGGTGAG 416840 Query 68441 GGTCTTGACGAA 68452 ||||||||||| Sbjct 416839 AGTCTTGACGAA 416828 Score = 89.7 bits (98), Expect = 9e-13 Identities = 63/72 (88%), Gaps = 0/72 (0%) Strand=Plus/Plus Query 84456 GCCCGGTTAGCTCAGTCGGCAGAGCGCAAGGCTCTTAACCTTGTGGTCGTGGGTTCGAGC 84515 ||||||||||||||||||| ||||| | || ||||||| || || |||| |||||||||| Sbjct 560296 GCCCGGTTAGCTCAGTCGGTAGAGCACCAGACTCTTAATCTGGTTGTCGCGGGTTCGAGC 560355 Query 84516 CCCACATCGGGC 84527 ||| |||||||| Sbjct 560356 CCCGCATCGGGC 560367 Score = 89.7 bits (98), Expect = 9e-13 Identities = 63/72 (88%), Gaps = 0/72 (0%) Strand=Plus/Plus Query 84456 GCCCGGTTAGCTCAGTCGGCAGAGCGCAAGGCTCTTAACCTTGTGGTCGTGGGTTCGAGC 84515 ||||||||||||||||||| ||||| | || ||||||| || || |||| |||||||||| Sbjct 1184951 GCCCGGTTAGCTCAGTCGGTAGAGCACCAGACTCTTAATCTGGTTGTCGCGGGTTCGAGC 1185010 Query 84516 CCCACATCGGGC 84527 ||| |||||||| Sbjct 1185011 CCCGCATCGGGC 1185022 >seq36 Length=625759 Score = 109 bits (120), Expect = 1e-18 Identities = 111/142 (78%), Gaps = 2/142 (1%) Strand=Plus/Plus Query 68322 CCGGCGAATATGAGTCTTTGTTGGTCGGGTGGAATGCCTTCCTTGTCTTGAATCTTTGCC 68381 ||||| || || | | || || || || |||||||| |||||||| || ||||||||| Sbjct 424717 CCGGCAAAGATCAAACGCTGCTGATCCGGCGGAATGCCCTCCTTGTCCTGGATCTTTGCC 424776 Query 68382 TTGACGGCCTCGATGGTGTCTGCT-GATTCTACTTCCAAGGTGATGGTTTTTCCCGTGAG 68440 || ||| |||||||||||| ||| | || || |||| |||||||| ||||| ||||| Sbjct 424777 TTCACGTTCTCGATGGTGTC-GCTGGCCTCAACCTCCAGAGTGATGGTCTTTCCGGTGAG 424835 Query 68441 GGTCTTGACGAATATCTGCATT 68462 |||||||| || || |||||| Sbjct 424836 CGTCTTGACAAAAATTTGCATT 424857 Score = 109 bits (120), Expect = 1e-18 Identities = 111/142 (78%), Gaps = 2/142 (1%) Strand=Plus/Plus Query 68322 CCGGCGAATATGAGTCTTTGTTGGTCGGGTGGAATGCCTTCCTTGTCTTGAATCTTTGCC 68381 |||||||| || | | || || || || |||||||| |||||||| || ||||||||| Sbjct 424990 CCGGCGAAGATCAAACGCTGCTGATCCGGCGGAATGCCCTCCTTGTCCTGGATCTTTGCC 425049 Query 68382 TTGACGGCCTCGATGGTGTCTGCT-GATTCTACTTCCAAGGTGATGGTTTTTCCCGTGAG 68440 || ||| |||||||||||| ||| | || || |||| |||||||| || || ||||| Sbjct 425050 TTCACGTTCTCGATGGTGTC-GCTGGCCTCAACCTCCAGAGTGATGGTCTTGCCGGTGAG 425108 Query 68441 GGTCTTGACGAATATCTGCATT 68462 |||||||| || || |||||| Sbjct 425109 CGTCTTGACAAAAATTTGCATT 425130 Score = 102 bits (112), Expect = 2e-16 Identities = 111/145 (77%), Gaps = 2/145 (1%) Strand=Plus/Plus Query 68322 CCGGCGAATATGAGTCTTTGTTGGTCGGGTGGAATGCCTTCCTTGTCTTGAATCTTTGCC 68381 ||||| || || | | || || || || |||||||| |||||||| || ||||||||| Sbjct 425263 CCGGCAAAGATCAAGCGCTGCTGATCCGGCGGAATGCCCTCCTTGTCCTGGATCTTTGCC 425322 Query 68382 TTGACGGCCTCGATGGTGTCTGCT-GATTCTACTTCCAAGGTGATGGTTTTTCCCGTGAG 68440 || || |||||||||||| ||| | || || |||| |||||||| || || || || Sbjct 425323 TTCACATTCTCGATGGTGTC-GCTGGCCTCAACCTCCAGAGTGATGGTCTTGCCGGTAAG 425381 Query 68441 GGTCTTGACGAATATCTGCATTATG 68465 ||||| ||||| |||||||| ||| Sbjct 425382 CGTCTTCACGAAAATCTGCATGATG 425406 >seq202 Length=131032 Score = 96.9 bits (106), Expect = 6e-15 Identities = 144/201 (72%), Gaps = 5/201 (2%) Strand=Plus/Plus Query 68268 GACTCTTTTTGGATGTTATAATCGGAGAGTGTCCTCCCATCTTCTAACTGCTTCCCGGCG 68327 ||||| ||||| ||||| || |||| | | | | || || ||||| ||||| || Sbjct 51411 GACTCCTTTTGAATGTTGTAGTCGGCCACGCTGCACATGTCGTCCAACTGTTTCCCCGCA 51470 Query 68328 AATATGAGTCTTTGTTGGTCGGGTGGAATGCCTTCCTTGTCTTGAATCTTTGCCTTGACG 68387 ||||| |||| |||||| || || |||| || || ||||| || || || | ||| ||| Sbjct 51471 AATATCAGTCGTTGTTGCTCCGGCCGAATCCCCTCTTTGTCATGGATTTTGGTCTTCACG 51530 Query 68388 GCCTCGATGGTGTCTGCTGAT-TCTACTTCCAAGGTGATGGTTTTTCCCGTGAGGGTCTT 68446 | |||| ||| | ||| | || || | || |||||||| || || |||| ||||| Sbjct 51531 TTCGCGATAGTGCCA-CTGGTCTCAACCTTCAGAGTGATGGTCTTCCCGGTGAAAGTCTT 51589 Query 68447 GACGAATATCTG---CATTAT 68464 ||||||||||| |||||| Sbjct 51590 TACGAATATCTGTGTCATTAT 51610 >seq19 Length=777910 Score = 87.8 bits (96), Expect = 3e-12 Identities = 78/98 (80%), Gaps = 0/98 (0%) Strand=Plus/Minus Query 268403 GGGCTCTCGTGGTTGAAGAGGATGCCGTTGCACGCGAACATGCCATATGCCTCACGGTAG 268462 || |||||||||||||| || ||||||||||| | ||||| | || ||||| |||||| Sbjct 223418 GGACTCTCGTGGTTGAACAGAATGCCGTTGCAGGTAAACATTCTGTAGGCCTCGCGGTAG 223359 Query 268463 TTCACGACCGTCCAGTATGCAAACATCTTTGCAACTGC 268500 || || || ||||||| | | ||| ||||||||| || Sbjct 223358 TTAACCACAATCCAGTAGGAATACAGCTTTGCAACCGC 223321 >seq98 Length=260685 Score = 84.2 bits (92), Expect = 4e-11 Identities = 63/74 (85%), Gaps = 0/74 (0%) Strand=Plus/Minus Query 84454 GCGCCCGGTTAGCTCAGTCGGCAGAGCGCAAGGCTCTTAACCTTGTGGTCGTGGGTTCGA 84513 ||||||||||||||||||||| ||||| | || ||||||| || || ||| |||||||| Sbjct 97939 GCGCCCGGTTAGCTCAGTCGGTAGAGCACCAGACTCTTAATCTGGTTGTCACGGGTTCGA 97880 Query 84514 GCCCCACATCGGGC 84527 ||||| ||||||| Sbjct 97879 GCCCCGTATCGGGC 97866 Score = 84.2 bits (92), Expect = 4e-11 Identities = 63/74 (85%), Gaps = 0/74 (0%) Strand=Plus/Minus Query 84454 GCGCCCGGTTAGCTCAGTCGGCAGAGCGCAAGGCTCTTAACCTTGTGGTCGTGGGTTCGA 84513 ||||||||||||||||||||| ||||| | || ||||||| || || ||| |||||||| Sbjct 98533 GCGCCCGGTTAGCTCAGTCGGTAGAGCACCAGACTCTTAATCTGGTTGTCACGGGTTCGA 98474 Query 84514 GCCCCACATCGGGC 84527 ||||| ||||||| Sbjct 98473 GCCCCGTATCGGGC 98460 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 921596525451120