Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Globodera_20ellingtonae_20[genbank_20GCA_5F001723225.1_202016-09-12] 2,246 sequences; 105,964,814 total letters Query= NC_009011.2 Length=131331 Score E Sequences producing significant alignments: (Bits) Value seq62 96.9 3e-15 seq9 96.9 3e-15 >seq62 Length=411361 Score = 96.9 bits (106), Expect = 3e-15 Identities = 140/198 (71%), Gaps = 0/198 (0%) Strand=Plus/Plus Query 114186 GTAGATTCTTTTTGAATGTTGTAATCGCTCATAGTACGAGAATCTTCAAGTTGTTTACCA 114245 ||||| || || ||||||||||| ||| || || || |||||| || ||||| || Sbjct 311311 GTAGACTCCTTCTGAATGTTGTAGTCGGCCAACGTGCGGCCATCTTCGAGCTGTTTGCCG 311370 Query 114246 GCGTAGATGAGACGCTGTTGGTCCGGAGGAATGCCTTCTTTGTCGGCAATCTTTTGTTTT 114305 || |||| || || || || || || || ||||| || ||||| ||||| || Sbjct 311371 GCAAAGATCAGCCGTTGCTGATCAGGCGGGATGCCCTCCTTGTCCTGGATCTTCGTCTTC 311430 Query 114306 AGCTGTTCAACGGTGTCGGTGGATTCGACGTCCACGGTCACCGTTTTGCCGGTCAGAGTT 114365 | | ||||| ||||| | || ||||||| || | ||||||||||||||| || Sbjct 311431 ACGTTGTCAACTGTGTCCGAACTCTCCACGTCCAAAGTGATCGTTTTGCCGGTCAGTGTC 311490 Query 114366 TTTACAAAAATCTGCATG 114383 || || ||||| |||||| Sbjct 311491 TTCACGAAAATTTGCATG 311508 >seq9 Length=1094565 Score = 96.9 bits (106), Expect = 3e-15 Identities = 140/198 (71%), Gaps = 0/198 (0%) Strand=Plus/Plus Query 114186 GTAGATTCTTTTTGAATGTTGTAATCGCTCATAGTACGAGAATCTTCAAGTTGTTTACCA 114245 ||||| || || ||||||||||| ||| || || || |||||| || ||||| || Sbjct 204402 GTAGACTCCTTCTGAATGTTGTAGTCGGCCAACGTGCGGCCATCTTCGAGCTGTTTGCCG 204461 Query 114246 GCGTAGATGAGACGCTGTTGGTCCGGAGGAATGCCTTCTTTGTCGGCAATCTTTTGTTTT 114305 || |||| || || || || || || || ||||| || ||||| ||||| || Sbjct 204462 GCAAAGATCAGCCGTTGCTGATCAGGCGGGATGCCCTCCTTGTCCTGGATCTTCGTCTTC 204521 Query 114306 AGCTGTTCAACGGTGTCGGTGGATTCGACGTCCACGGTCACCGTTTTGCCGGTCAGAGTT 114365 | | ||||| ||||| | || ||||||| || | ||||||||||||||| || Sbjct 204522 ACGTTGTCAACTGTGTCCGAACTCTCCACGTCCAAAGTGATCGTTTTGCCGGTCAGTGTC 204581 Query 114366 TTTACAAAAATCTGCATG 114383 || || ||||| |||||| Sbjct 204582 TTCACGAAAATTTGCATG 204599 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 420122899608552