Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Globodera_20ellingtonae_20[genbank_20GCA_5F001723225.1_202016-09-12] 2,246 sequences; 105,964,814 total letters Query= NC_009503.1 Length=124121 Score E Sequences producing significant alignments: (Bits) Value seq62 82.4 6e-11 seq9 82.4 6e-11 >seq62 Length=411361 Score = 82.4 bits (90), Expect = 6e-11 Identities = 99/135 (73%), Gaps = 0/135 (0%) Strand=Plus/Plus Query 33901 CCTCCTCTCAGCCGCAGCACCAGATGAAGCGTGCTCTCCTTCTGAATGTTGTAATCTGCC 33960 || || || || || || |||| ||||| || |||||||||||||||||| || ||| Sbjct 311281 CCGCCCCTGAGGCGAAGGACCAAGTGAAGAGTAGACTCCTTCTGAATGTTGTAGTCGGCC 311340 Query 33961 AATTGTCGCTCGTCGTCCAATTGCTTGCCGGCAAATATCAGGCGCTGCTGATCCACCGGC 34020 || || | || || | || ||||||||||| ||||| || |||||||| ||| Sbjct 311341 AACGTGCGGCCATCTTCGAGCTGTTTGCCGGCAAAGATCAGCCGTTGCTGATCAGGCGGG 311400 Query 34021 ACGCTCTCTTTGTCC 34035 | || ||| |||||| Sbjct 311401 ATGCCCTCCTTGTCC 311415 >seq9 Length=1094565 Score = 82.4 bits (90), Expect = 6e-11 Identities = 99/135 (73%), Gaps = 0/135 (0%) Strand=Plus/Plus Query 33901 CCTCCTCTCAGCCGCAGCACCAGATGAAGCGTGCTCTCCTTCTGAATGTTGTAATCTGCC 33960 || || || || || || |||| ||||| || |||||||||||||||||| || ||| Sbjct 204372 CCGCCCCTGAGGCGAAGGACCAAGTGAAGAGTAGACTCCTTCTGAATGTTGTAGTCGGCC 204431 Query 33961 AATTGTCGCTCGTCGTCCAATTGCTTGCCGGCAAATATCAGGCGCTGCTGATCCACCGGC 34020 || || | || || | || ||||||||||| ||||| || |||||||| ||| Sbjct 204432 AACGTGCGGCCATCTTCGAGCTGTTTGCCGGCAAAGATCAGCCGTTGCTGATCAGGCGGG 204491 Query 34021 ACGCTCTCTTTGTCC 34035 | || ||| |||||| Sbjct 204492 ATGCCCTCCTTGTCC 204506 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 397051531161292