Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Globodera_20ellingtonae_20[genbank_20GCA_5F001723225.1_202016-09-12] 2,246 sequences; 105,964,814 total letters Query= NC_009898.1 Length=368683 Score E Sequences producing significant alignments: (Bits) Value seq4 102 2e-16 seq202 91.5 3e-13 seq551 86.0 1e-11 >seq4 Length=1352950 Score = 102 bits (112), Expect = 2e-16 Identities = 109/144 (76%), Gaps = 0/144 (0%) Strand=Plus/Minus Query 288334 CCTGCGAAGATCAGACGCTGTTGAGAATCTGGGATTCCTTCTTTATCCTGGATTTTCGCT 288393 || || |||||||||||||| || | || || || || || |||||||| || || Sbjct 416594 CCGGCAAAGATCAGACGCTGCTGGTCAGGCGGAATGCCCTCCTTGTCCTGGATCTTGGCC 416535 Query 288394 TTCACGTTTTCTATAGAATCGCTCGATTCTACTTCGAGCGTGATCGTCTTCCCGGTCAGA 288453 |||||||| || || | |||||| | || || || | ||||| ||||| ||||| ||| Sbjct 416534 TTCACGTTCTCGATGGTATCGCTGGCCTCGACCTCCAAAGTGATGGTCTTGCCGGTGAGA 416475 Query 288454 GTCTTGACGAATATCTGCATTATG 288477 ||||||||||| || ||||| ||| Sbjct 416474 GTCTTGACGAAAATTTGCATGATG 416451 Score = 102 bits (112), Expect = 2e-16 Identities = 107/141 (76%), Gaps = 0/141 (0%) Strand=Plus/Minus Query 288334 CCTGCGAAGATCAGACGCTGTTGAGAATCTGGGATTCCTTCTTTATCCTGGATTTTCGCT 288393 || || |||||||||||||| ||| | || || || || || |||||||| || || Sbjct 417241 CCGGCAAAGATCAGACGCTGCTGATCAGGCGGAATGCCCTCCTTGTCCTGGATCTTGGCC 417182 Query 288394 TTCACGTTTTCTATAGAATCGCTCGATTCTACTTCGAGCGTGATCGTCTTCCCGGTCAGA 288453 |||||||| || || | ||||| | || || || | ||||| ||||| ||||| ||| Sbjct 417181 TTCACGTTCTCGATGGTGTCGCTGGCCTCGACCTCCAAAGTGATGGTCTTGCCGGTGAGA 417122 Query 288454 GTCTTGACGAATATCTGCATT 288474 ||||||||||| || |||||| Sbjct 417121 GTCTTGACGAAAATTTGCATT 417101 Score = 102 bits (112), Expect = 2e-16 Identities = 107/141 (76%), Gaps = 0/141 (0%) Strand=Plus/Minus Query 288334 CCTGCGAAGATCAGACGCTGTTGAGAATCTGGGATTCCTTCTTTATCCTGGATTTTCGCT 288393 || || |||||||||||||| || | || || || || || |||||||| || || Sbjct 417800 CCGGCAAAGATCAGACGCTGCTGGTCAGGCGGAATGCCCTCCTTGTCCTGGATCTTGGCC 417741 Query 288394 TTCACGTTTTCTATAGAATCGCTCGATTCTACTTCGAGCGTGATCGTCTTCCCGGTCAGA 288453 |||||||| || || | ||||| | || || ||||| ||||| ||||| ||||| || Sbjct 417740 TTCACGTTCTCGATGGTGTCGCTGGCCTCGACCTCGAGAGTGATGGTCTTGCCGGTGAGC 417681 Query 288454 GTCTTGACGAATATCTGCATT 288474 ||||||||||| || |||||| Sbjct 417680 GTCTTGACGAAAATTTGCATT 417660 Score = 98.7 bits (108), Expect = 2e-15 Identities = 108/144 (75%), Gaps = 0/144 (0%) Strand=Plus/Plus Query 288334 CCTGCGAAGATCAGACGCTGTTGAGAATCTGGGATTCCTTCTTTATCCTGGATTTTCGCT 288393 || || |||||||||||||| || | || || || || || |||||||| || || Sbjct 415637 CCGGCAAAGATCAGACGCTGCTGGTCAGGCGGAATGCCCTCCTTGTCCTGGATCTTGGCC 415696 Query 288394 TTCACGTTTTCTATAGAATCGCTCGATTCTACTTCGAGCGTGATCGTCTTCCCGGTCAGA 288453 |||||||| || || | ||||| | || || || | ||||| ||||| ||||| ||| Sbjct 415697 TTCACGTTCTCGATGGTGTCGCTGGCCTCGACCTCCAAAGTGATGGTCTTGCCGGTGAGA 415756 Query 288454 GTCTTGACGAATATCTGCATTATG 288477 ||||||||||| || ||||| ||| Sbjct 415757 GTCTTGACGAAAATTTGCATGATG 415780 Score = 96.9 bits (106), Expect = 8e-15 Identities = 100/131 (76%), Gaps = 0/131 (0%) Strand=Plus/Minus Query 288334 CCTGCGAAGATCAGACGCTGTTGAGAATCTGGGATTCCTTCTTTATCCTGGATTTTCGCT 288393 || || |||||||||||||| ||| | || || || || || |||||||| || || Sbjct 416958 CCGGCAAAGATCAGACGCTGCTGATCAGGCGGAATGCCCTCCTTGTCCTGGATCTTGGCC 416899 Query 288394 TTCACGTTTTCTATAGAATCGCTCGATTCTACTTCGAGCGTGATCGTCTTCCCGGTCAGA 288453 |||||||| || || | |||||| | || || || | ||||| ||||| ||||| ||| Sbjct 416898 TTCACGTTCTCGATGGTATCGCTGGCCTCGACCTCCAAAGTGATGGTCTTGCCGGTGAGA 416839 Query 288454 GTCTTGACGAA 288464 ||||||||||| Sbjct 416838 GTCTTGACGAA 416828 Score = 93.3 bits (102), Expect = 1e-13 Identities = 106/141 (75%), Gaps = 1/141 (1%) Strand=Plus/Minus Query 288334 CCTGCGAAGATCAGACGCTGTTGAGAATCTGGGATTCCTTCTTTATCCTGGATTTTCGCT 288393 || || |||||||||||||| || | || || || || || |||||||| || || Sbjct 417520 CCGGCAAAGATCAGACGCTGCTGGTCAGGCGGAATGCCCTCCTTGTCCTGGATCTTGGCC 417461 Query 288394 TTCACGTTTTCTATAGAATCGCTCGATTCTACTTCGAGCGTGATCGTCTTCCCGGTCAGA 288453 |||||||| || || | ||||| | || || || | ||||| ||||| ||||| ||| Sbjct 417460 TTCACGTTCTCGATGGTGTCGCT-GCCTCGACCTCCAAAGTGATGGTCTTGCCGGTGAGA 417402 Query 288454 GTCTTGACGAATATCTGCATT 288474 ||||||||||| || |||||| Sbjct 417401 GTCTTGACGAAAATTTGCATT 417381 >seq202 Length=131032 Score = 91.5 bits (100), Expect = 3e-13 Identities = 143/203 (70%), Gaps = 9/203 (4%) Strand=Plus/Plus Query 288283 TCTTTTTGGATATTATAGTCGGCGAGCGTGCGTCCGTCTTCTAATTGTTTTCCTGCGAAG 288342 || ||||| || || |||||||| | ||| ||| || || ||||| || || || Sbjct 51414 TCCTTTTGAATGTTGTAGTCGGCCACGCTGCACATGTCGTCCAACTGTTTCCCCGCAAAT 51473 Query 288343 ATCAGACGCTGTTGAGAATCTGGG---ATTCCTTCTTTATCCTGGATTTTCGCTTTCACG 288399 ||||| || ||||| || || || || ||||| || |||||||| | |||||| Sbjct 51474 ATCAGTCGTTGTTGC---TCCGGCCGAATCCCCTCTTTGTCATGGATTTTGGTCTTCACG 51530 Query 288400 TTTTCTATAGAATCGCTCGATTCTACTTCGAGCGTGATCGTCTTCCCGGTCAGAGTCTTG 288459 || | |||| | || | || || | || ||||| ||||||||||| | |||||| Sbjct 51531 TTCGCGATAGTGCCACTGGTCTCAACCTTCAGAGTGATGGTCTTCCCGGTGAAAGTCTTT 51590 Query 288460 ACGAATATCTG---CATTATGTT 288479 ||||||||||| |||||| || Sbjct 51591 ACGAATATCTGTGTCATTATTTT 51613 >seq551 Length=22149 Score = 86.0 bits (94), Expect = 1e-11 Identities = 112/155 (72%), Gaps = 0/155 (0%) Strand=Plus/Plus Query 288274 ATCGTGCTTTCTTTTTGGATATTATAGTCGGCGAGCGTGCGTCCGTCTTCTAATTGTTTT 288333 |||||| ||| || ||||| | ||||| || | || || ||||||| || ||||||| Sbjct 11249 ATCGTGGATTCCTTCTGGATGCTGTAGTCTGCCAAAGTACGGCCGTCTTTTAGTTGTTTT 11308 Query 288334 CCTGCGAAGATCAGACGCTGTTGAGAATCTGGGATTCCTTCTTTATCCTGGATTTTCGCT 288393 || ||||||||||||| |||||| || || ||| |||||| ||||| || | Sbjct 11309 CCGTTGAAGATCAGACGCGGTTGAGCCAGCGGAATGCCTCCTTTATTCTGGACCTTGGTC 11368 Query 288394 TTCACGTTTTCTATAGAATCGCTCGATTCTACTTC 288428 |||| ||| || || | |||| | || || || || Sbjct 11369 TTCATGTTCTCGATGGTATCGTTAGACTCAACCTC 11403 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1179620453232788