Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Globodera_20ellingtonae_20[genbank_20GCA_5F001723225.1_202016-09-12] 2,246 sequences; 105,964,814 total letters Query= NC_010240.1 Length=169794 Score E Sequences producing significant alignments: (Bits) Value seq32 84.2 2e-11 seq4 82.4 8e-11 >seq32 Length=600051 Score = 84.2 bits (92), Expect = 2e-11 Identities = 136/193 (70%), Gaps = 2/193 (1%) Strand=Plus/Plus Query 42018 TCCTTTTGAATATTGTAATCAGCCAGAGTCCGCTCGTCATCTAGCTGCTTACCAGCGAAT 42077 ||||||||||| ||||| ||||||| ||| | || ||||| ||||| || || || || Sbjct 414379 TCCTTTTGAATGTTGTAGTCAGCCAAAGTGCCATCATCATCGAGCTGTTTGCCCGCAAAG 414438 Query 42078 ATGAGTCGCTGCTGGTCGGCTGGCACGCTCTCCTTGTCCATGATTTTTTGTTTGAGCGTC 42137 || ||||| ||||| | | ||| | || ||| || || || ||| ||||| | | Sbjct 414439 ATCAGTCGTTGCTGTTTAGTTGGGATGCCTTCCATGGCCTGGACTTTCTGTTTCACATTG 414498 Query 42138 GCCACCGTGTCGCTCGAT-TCCACATCGACCGTGATGGTTTTGCCCGTTAGCGTCTTTAC 42196 | ||||| | | | | ||| || | ||| |||| ||| ||||| | || || || Sbjct 414499 TTGATGGTGTC-CGAGCTGTGCACCTCCAGCGTCATGGCTTTTCCCGTCAAAGTTTTCAC 414557 Query 42197 AAAGATTTGCATT 42209 ||| ||||||||| Sbjct 414558 AAAAATTTGCATT 414570 >seq4 Length=1352950 Score = 82.4 bits (90), Expect = 8e-11 Identities = 105/145 (72%), Gaps = 0/145 (0%) Strand=Plus/Minus Query 42065 CTTACCAGCGAATATGAGTCGCTGCTGGTCGGCTGGCACGCTCTCCTTGTCCATGATTTT 42124 || ||| || || || || ||||||||||| | || | || |||||||||| ||| || Sbjct 417804 CTGACCGGCAAAGATCAGACGCTGCTGGTCAGGCGGAATGCCCTCCTTGTCCTGGATCTT 417745 Query 42125 TTGTTTGAGCGTCGCCACCGTGTCGCTCGATTCCACATCGACCGTGATGGTTTTGCCCGT 42184 || | || | | |||||||| | || || |||| |||||||| ||||| || Sbjct 417744 GGCCTTCACGTTCTCGATGGTGTCGCTGGCCTCGACCTCGAGAGTGATGGTCTTGCCGGT 417685 Query 42185 TAGCGTCTTTACAAAGATTTGCATT 42209 |||||||| || || ||||||||| Sbjct 417684 GAGCGTCTTGACGAAAATTTGCATT 417660 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 543197549300640