Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Globodera_20ellingtonae_20[genbank_20GCA_5F001723225.1_202016-09-12] 2,246 sequences; 105,964,814 total letters Query= NC_011345.1 Length=155122 Score E Sequences producing significant alignments: (Bits) Value seq4 91.5 1e-13 seq62 89.7 5e-13 seq9 89.7 5e-13 seq32 82.4 8e-11 >seq4 Length=1352950 Score = 91.5 bits (100), Expect = 1e-13 Identities = 122/167 (73%), Gaps = 2/167 (1%) Strand=Plus/Plus Query 153586 ATCGATTCACGGCAATAGACGCCAGATTACAGACGGCCGTCTCTTC-GGCGTCGCTGTAC 153644 ||||||| | ||||| || |||| || || || || ||||| || || | || || Sbjct 596797 ATCGATTAAGCGCAATGGAGGCCAAGTTGCACACAGCGGTCTCATCCGGTGACGAA-TAT 596855 Query 153645 TGCACGATCTCGGCGCAGAGGTTGCTGCATTTTATGACGCCCAAATTTTGCTGATTGCTT 153704 | | ||| |||| ||| | || |||||||||| |||||| ||||||||||| Sbjct 596856 TCAATGATTTCGGTGCACAAATTTGAGCATTTTATGGTGCCCAAGTTTTGCTGATTTGAC 596915 Query 153705 TTGCGATTGCACGCGTCTTTGAAGAGCATGTACGGTCCGCCGGTCTC 153751 || |||||||||||||| || || | ||||||||| ||||||||| Sbjct 596916 TTCCGATTGCACGCGTCCTTAAACAACATGTACGGCGTGCCGGTCTC 596962 >seq62 Length=411361 Score = 89.7 bits (98), Expect = 5e-13 Identities = 140/197 (71%), Gaps = 4/197 (2%) Strand=Plus/Plus Query 138421 GACTCCTTTTGAATGTTGTAGTCGCTCATAGTACGCGAGTCCTCGAGTTGTTTACCGGAA 138480 |||||||| ||||||||||||||| || || || || ||||| ||||| |||| | Sbjct 311314 GACTCCTTCTGAATGTTGTAGTCGGCCAACGTGCGGCCATCTTCGAGCTGTTTGCCGGCA 311373 Query 138481 TAGATTAGACGCTGTTGGTCCGGAGGTATACCTTCTTTGTCGGTGATTTTTTGTTTTAA- 138539 |||| || || || || || || || || || || ||||| || | || || || | Sbjct 311374 AAGATCAGCCGTTGCTGATCAGGCGGGATGCCCTCCTTGTC-CTGGATCTTCGTCTTCAC 311432 Query 138540 -TTGTTCCACGGTGTCGGTCGACTCCACCTCGACCGTCAGCGTTTTACCAGTCAGAGTTT 138598 ||| || || ||||| | |||||| || | || | |||||| || ||||| || | Sbjct 311433 GTTG-TCAACTGTGTCCGAACTCTCCACGTCCAAAGTGATCGTTTTGCCGGTCAGTGTCT 311491 Query 138599 TTACAAAAATCTGCATG 138615 | || ||||| |||||| Sbjct 311492 TCACGAAAATTTGCATG 311508 >seq9 Length=1094565 Score = 89.7 bits (98), Expect = 5e-13 Identities = 140/197 (71%), Gaps = 4/197 (2%) Strand=Plus/Plus Query 138421 GACTCCTTTTGAATGTTGTAGTCGCTCATAGTACGCGAGTCCTCGAGTTGTTTACCGGAA 138480 |||||||| ||||||||||||||| || || || || ||||| ||||| |||| | Sbjct 204405 GACTCCTTCTGAATGTTGTAGTCGGCCAACGTGCGGCCATCTTCGAGCTGTTTGCCGGCA 204464 Query 138481 TAGATTAGACGCTGTTGGTCCGGAGGTATACCTTCTTTGTCGGTGATTTTTTGTTTTAA- 138539 |||| || || || || || || || || || || ||||| || | || || || | Sbjct 204465 AAGATCAGCCGTTGCTGATCAGGCGGGATGCCCTCCTTGTC-CTGGATCTTCGTCTTCAC 204523 Query 138540 -TTGTTCCACGGTGTCGGTCGACTCCACCTCGACCGTCAGCGTTTTACCAGTCAGAGTTT 138598 ||| || || ||||| | |||||| || | || | |||||| || ||||| || | Sbjct 204524 GTTG-TCAACTGTGTCCGAACTCTCCACGTCCAAAGTGATCGTTTTGCCGGTCAGTGTCT 204582 Query 138599 TTACAAAAATCTGCATG 138615 | || ||||| |||||| Sbjct 204583 TCACGAAAATTTGCATG 204599 >seq32 Length=600051 Score = 82.4 bits (90), Expect = 8e-11 Identities = 135/192 (70%), Gaps = 2/192 (1%) Strand=Plus/Plus Query 138424 TCCTTTTGAATGTTGTAGTCGCTCATAGTACGCGAGTCCTCGAGTTGTTTACCGGAATAG 138483 |||||||||||||||||||| || ||| | || ||||| ||||| || | | || Sbjct 414379 TCCTTTTGAATGTTGTAGTCAGCCAAAGTGCCATCATCATCGAGCTGTTTGCCCGCAAAG 414438 Query 138484 ATTAGACGCTGTTGGTCCGGAGGTATACCTTCTTTGTCGGTGATTTTTTGTTTTA-ATTG 138542 || || || || || | | || || ||||| || | || ||| ||||| | |||| Sbjct 414439 ATCAGTCGTTGCTGTTTAGTTGGGATGCCTTCCATGGCCTGGACTTTCTGTTTCACATTG 414498 Query 138543 TTCCACGGTGTCGGTCGACTCCACCTCGACCGTCAGCGTTTTACCAGTCAGAGTTTTTAC 138602 || | |||||| | | |||||| | ||||| | ||| || |||| |||||| || Sbjct 414499 TT-GATGGTGTCCGAGCTGTGCACCTCCAGCGTCATGGCTTTTCCCGTCAAAGTTTTCAC 414557 Query 138603 AAAAATCTGCAT 138614 |||||| ||||| Sbjct 414558 AAAAATTTGCAT 414569 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 496248467433120