Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Globodera_20ellingtonae_20[genbank_20GCA_5F001723225.1_202016-09-12] 2,246 sequences; 105,964,814 total letters Query= NC_011616.1 Length=148634 Score E Sequences producing significant alignments: (Bits) Value seq62 158 1e-33 seq9 158 1e-33 seq36 86.0 6e-12 seq703 82.4 7e-11 seq555 82.4 7e-11 seq551 82.4 7e-11 seq4 82.4 7e-11 >seq62 Length=411361 Score = 158 bits (174), Expect = 1e-33 Identities = 163/211 (77%), Gaps = 2/211 (1%) Strand=Plus/Plus Query 126905 ACCAAATGTATCGTAGACTCTTTTTGAATATTGTAATCGCCCATCGTGCGAGAATCGTCT 126964 ||||| || | |||||||| || ||||| ||||| ||| ||| |||||| ||| || Sbjct 311299 ACCAAGTGAAGAGTAGACTCCTTCTGAATGTTGTAGTCGGCCAACGTGCGGCCATCTTCG 311358 Query 126965 AGCTGTTTTCCAGCGTAGATCAATCGCTGCTGATCGGGAGGTATGCCCTCCTTGTCCGTG 127024 |||||||| || || |||||| || |||||||| || || ||||||||||||||| | Sbjct 311359 AGCTGTTTGCCGGCAAAGATCAGCCGTTGCTGATCAGGCGGGATGCCCTCCTTGTCCTGG 311418 Query 127025 ATTTTCTGCTTGA-GTTGTTCGACGGTGTCCGTACTCTCGACTTCGACGGTCACCGTTTT 127083 || ||| ||| | |||| || || ||||||| |||||| || || | || | |||||| Sbjct 311419 ATCTTCGTCTTCACGTTG-TCAACTGTGTCCGAACTCTCCACGTCCAAAGTGATCGTTTT 311477 Query 127084 GCCGGTCAGAGTTTTTACAAAAATCTGCATG 127114 ||||||||| || || || ||||| |||||| Sbjct 311478 GCCGGTCAGTGTCTTCACGAAAATTTGCATG 311508 >seq9 Length=1094565 Score = 158 bits (174), Expect = 1e-33 Identities = 163/211 (77%), Gaps = 2/211 (1%) Strand=Plus/Plus Query 126905 ACCAAATGTATCGTAGACTCTTTTTGAATATTGTAATCGCCCATCGTGCGAGAATCGTCT 126964 ||||| || | |||||||| || ||||| ||||| ||| ||| |||||| ||| || Sbjct 204390 ACCAAGTGAAGAGTAGACTCCTTCTGAATGTTGTAGTCGGCCAACGTGCGGCCATCTTCG 204449 Query 126965 AGCTGTTTTCCAGCGTAGATCAATCGCTGCTGATCGGGAGGTATGCCCTCCTTGTCCGTG 127024 |||||||| || || |||||| || |||||||| || || ||||||||||||||| | Sbjct 204450 AGCTGTTTGCCGGCAAAGATCAGCCGTTGCTGATCAGGCGGGATGCCCTCCTTGTCCTGG 204509 Query 127025 ATTTTCTGCTTGA-GTTGTTCGACGGTGTCCGTACTCTCGACTTCGACGGTCACCGTTTT 127083 || ||| ||| | |||| || || ||||||| |||||| || || | || | |||||| Sbjct 204510 ATCTTCGTCTTCACGTTG-TCAACTGTGTCCGAACTCTCCACGTCCAAAGTGATCGTTTT 204568 Query 127084 GCCGGTCAGAGTTTTTACAAAAATCTGCATG 127114 ||||||||| || || || ||||| |||||| Sbjct 204569 GCCGGTCAGTGTCTTCACGAAAATTTGCATG 204599 >seq36 Length=625759 Score = 86.0 bits (94), Expect = 6e-12 Identities = 103/140 (74%), Gaps = 0/140 (0%) Strand=Plus/Plus Query 126974 CCAGCGTAGATCAATCGCTGCTGATCGGGAGGTATGCCCTCCTTGTCCGTGATTTTCTGC 127033 || ||| ||||||| ||||||||||| || || ||||||||||||||| ||| || | Sbjct 424990 CCGGCGAAGATCAAACGCTGCTGATCCGGCGGAATGCCCTCCTTGTCCTGGATCTTTGCC 425049 Query 127034 TTGAGTTGTTCGACGGTGTCCGTACTCTCGACTTCGACGGTCACCGTTTTGCCGGTCAGA 127093 || | | |||| |||||| | ||| || || | || | || |||||||| || Sbjct 425050 TTCACGTTCTCGATGGTGTCGCTGGCCTCAACCTCCAGAGTGATGGTCTTGCCGGTGAGC 425109 Query 127094 GTTTTTACAAAAATCTGCAT 127113 || || |||||||| ||||| Sbjct 425110 GTCTTGACAAAAATTTGCAT 425129 Score = 84.2 bits (92), Expect = 2e-11 Identities = 99/134 (74%), Gaps = 0/134 (0%) Strand=Plus/Plus Query 126981 AGATCAATCGCTGCTGATCGGGAGGTATGCCCTCCTTGTCCGTGATTTTCTGCTTGAGTT 127040 ||||||| ||||||||||| || || ||||||||||||||| ||| || ||| | | Sbjct 425270 AGATCAAGCGCTGCTGATCCGGCGGAATGCCCTCCTTGTCCTGGATCTTTGCCTTCACAT 425329 Query 127041 GTTCGACGGTGTCCGTACTCTCGACTTCGACGGTCACCGTTTTGCCGGTCAGAGTTTTTA 127100 |||| |||||| | ||| || || | || | || |||||||| || || || | Sbjct 425330 TCTCGATGGTGTCGCTGGCCTCAACCTCCAGAGTGATGGTCTTGCCGGTAAGCGTCTTCA 425389 Query 127101 CAAAAATCTGCATG 127114 | |||||||||||| Sbjct 425390 CGAAAATCTGCATG 425403 >seq703 Length=10658 Score = 82.4 bits (90), Expect = 7e-11 Identities = 108/150 (72%), Gaps = 0/150 (0%) Strand=Plus/Plus Query 126904 CACCAAATGTATCGTAGACTCTTTTTGAATATTGTAATCGCCCATCGTGCGAGAATCGTC 126963 ||| | ||| | || ||||| || || || ||||| ||| || | || ||| || Sbjct 8165 CACGAGATGGAGAGTCGACTCCTTCTGGATGTTGTAGTCGGTCAAAATATGACGATCATC 8224 Query 126964 TAGCTGTTTTCCAGCGTAGATCAATCGCTGCTGATCGGGAGGTATGCCCTCCTTGTCCGT 127023 ||||||||||| ||| ||||||| |||||||||| | || ||||||||||||||| Sbjct 8225 AAGCTGTTTTCCGGCGAAGATCAAAAGCTGCTGATCAGACGGAATGCCCTCCTTGTCCTG 8284 Query 127024 GATTTTCTGCTTGAGTTGTTCGACGGTGTC 127053 ||| || ||| | || || || ||||| Sbjct 8285 GATCTTGGCCTTCACTTTTTGGATAGTGTC 8314 >seq555 Length=21539 Score = 82.4 bits (90), Expect = 7e-11 Identities = 108/150 (72%), Gaps = 0/150 (0%) Strand=Plus/Plus Query 126904 CACCAAATGTATCGTAGACTCTTTTTGAATATTGTAATCGCCCATCGTGCGAGAATCGTC 126963 ||| | ||| | || ||||| || || || ||||| ||| || | || ||| || Sbjct 4650 CACGAGATGGAGAGTCGACTCCTTCTGGATGTTGTAGTCGGTCAAAATATGACGATCATC 4709 Query 126964 TAGCTGTTTTCCAGCGTAGATCAATCGCTGCTGATCGGGAGGTATGCCCTCCTTGTCCGT 127023 ||||||||||| ||| ||||||| |||||||||| | || ||||||||||||||| Sbjct 4710 AAGCTGTTTTCCGGCGAAGATCAAAAGCTGCTGATCAGACGGAATGCCCTCCTTGTCCTG 4769 Query 127024 GATTTTCTGCTTGAGTTGTTCGACGGTGTC 127053 ||| || ||| | || || || ||||| Sbjct 4770 GATCTTGGCCTTCACTTTTTGGATAGTGTC 4799 >seq551 Length=22149 Score = 82.4 bits (90), Expect = 7e-11 Identities = 108/150 (72%), Gaps = 0/150 (0%) Strand=Plus/Minus Query 126904 CACCAAATGTATCGTAGACTCTTTTTGAATATTGTAATCGCCCATCGTGCGAGAATCGTC 126963 ||| | ||| | || ||||| || || || ||||| ||| || | || ||| || Sbjct 17500 CACGAGATGGAGAGTCGACTCCTTCTGGATGTTGTAGTCGGTCAAAATATGACGATCATC 17441 Query 126964 TAGCTGTTTTCCAGCGTAGATCAATCGCTGCTGATCGGGAGGTATGCCCTCCTTGTCCGT 127023 ||||||||||| ||| ||||||| |||||||||| | || ||||||||||||||| Sbjct 17440 AAGCTGTTTTCCGGCGAAGATCAAAAGCTGCTGATCAGACGGAATGCCCTCCTTGTCCTG 17381 Query 127024 GATTTTCTGCTTGAGTTGTTCGACGGTGTC 127053 ||| || ||| | || || || ||||| Sbjct 17380 GATCTTGGCCTTCACTTTTTGGATAGTGTC 17351 >seq4 Length=1352950 Score = 82.4 bits (90), Expect = 7e-11 Identities = 98/133 (74%), Gaps = 0/133 (0%) Strand=Plus/Minus Query 126981 AGATCAATCGCTGCTGATCGGGAGGTATGCCCTCCTTGTCCGTGATTTTCTGCTTGAGTT 127040 |||||| ||||||||||| || || ||||||||||||||| ||| || ||| | | Sbjct 417234 AGATCAGACGCTGCTGATCAGGCGGAATGCCCTCCTTGTCCTGGATCTTGGCCTTCACGT 417175 Query 127041 GTTCGACGGTGTCCGTACTCTCGACTTCGACGGTCACCGTTTTGCCGGTCAGAGTTTTTA 127100 |||| |||||| | |||||| || | || | || |||||||| ||||| || | Sbjct 417174 TCTCGATGGTGTCGCTGGCCTCGACCTCCAAAGTGATGGTCTTGCCGGTGAGAGTCTTGA 417115 Query 127101 CAAAAATCTGCAT 127113 | ||||| ||||| Sbjct 417114 CGAAAATTTGCAT 417102 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 475487450315040