Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Globodera_20ellingtonae_20[genbank_20GCA_5F001723225.1_202016-09-12] 2,246 sequences; 105,964,814 total letters Query= NC_013756.1 Length=368454 Score E Sequences producing significant alignments: (Bits) Value seq400 96.9 8e-15 seq275 96.9 8e-15 seq97 96.9 8e-15 seq36 95.1 3e-14 seq4 95.1 3e-14 seq703 89.7 1e-12 seq555 89.7 1e-12 seq551 89.7 1e-12 seq234 89.7 1e-12 seq32 87.8 4e-12 >seq400 Length=47941 Score = 96.9 bits (106), Expect = 8e-15 Identities = 82/101 (81%), Gaps = 0/101 (0%) Strand=Plus/Minus Query 199418 AGGACAAGGTGGAGAGTCGACTCCTTTTGGACGTTGTAGTCAGCCAAAGTCCTTCCATCT 199477 || ||||| |||||||| || ||||| |||| ||||||||| | ||||| || ||| Sbjct 29942 AGAACAAGATGGAGAGTGGATTCCTTCTGGATGTTGTAGTCGGTCAAAGCGTGACCGTCT 29883 Query 199478 TCCAGCTGCTTTCCGGCGAAGATGAGACGCTGCTGGTCCGG 199518 || |||||||||||||||||||| || || ||||| ||||| Sbjct 29882 TCGAGCTGCTTTCCGGCGAAGATTAGTCGATGCTGATCCGG 29842 >seq275 Length=99064 Score = 96.9 bits (106), Expect = 8e-15 Identities = 82/101 (81%), Gaps = 0/101 (0%) Strand=Plus/Minus Query 199418 AGGACAAGGTGGAGAGTCGACTCCTTTTGGACGTTGTAGTCAGCCAAAGTCCTTCCATCT 199477 || ||||| |||||||| || ||||| |||| ||||||||| | ||||| || ||| Sbjct 19853 AGAACAAGATGGAGAGTGGATTCCTTCTGGATGTTGTAGTCGGTCAAAGCGTGACCGTCT 19794 Query 199478 TCCAGCTGCTTTCCGGCGAAGATGAGACGCTGCTGGTCCGG 199518 || |||||||||||||||||||| || || ||||| ||||| Sbjct 19793 TCGAGCTGCTTTCCGGCGAAGATTAGTCGATGCTGATCCGG 19753 >seq97 Length=302941 Score = 96.9 bits (106), Expect = 8e-15 Identities = 82/101 (81%), Gaps = 0/101 (0%) Strand=Plus/Plus Query 199418 AGGACAAGGTGGAGAGTCGACTCCTTTTGGACGTTGTAGTCAGCCAAAGTCCTTCCATCT 199477 || ||||| |||||||| || ||||| |||| ||||||||| | ||||| || ||| Sbjct 46102 AGAACAAGATGGAGAGTGGATTCCTTCTGGATGTTGTAGTCGGTCAAAGCGTGACCGTCT 46161 Query 199478 TCCAGCTGCTTTCCGGCGAAGATGAGACGCTGCTGGTCCGG 199518 || |||||||||||||||||||| || || ||||| ||||| Sbjct 46162 TCGAGCTGCTTTCCGGCGAAGATTAGTCGATGCTGATCCGG 46202 >seq36 Length=625759 Score = 95.1 bits (104), Expect = 3e-14 Identities = 103/137 (75%), Gaps = 0/137 (0%) Strand=Plus/Plus Query 199490 CCGGCGAAGATGAGACGCTGCTGGTCCGGAAAAATTCCTTCTCGCTCCTGAATCTTTTGC 199549 ||||||||||| | ||||||||| ||||| ||| || || ||||| |||||| | Sbjct 424990 CCGGCGAAGATCAAACGCTGCTGATCCGGCGGAATGCCCTCCTTGTCCTGGATCTTTGCC 425049 Query 199550 TTCACGGATTCGACGGTGTCTGTTGTTTCTACATCCAACGTGATCGTCTTACCCGTGAGA 199609 |||||| |||| |||||| | | || || |||| ||||| ||||| || ||||| Sbjct 425050 TTCACGTTCTCGATGGTGTCGCTGGCCTCAACCTCCAGAGTGATGGTCTTGCCGGTGAGC 425109 Query 199610 GTTTTCACAAAAATTTG 199626 || || ||||||||||| Sbjct 425110 GTCTTGACAAAAATTTG 425126 Score = 89.7 bits (98), Expect = 1e-12 Identities = 102/137 (74%), Gaps = 0/137 (0%) Strand=Plus/Plus Query 199490 CCGGCGAAGATGAGACGCTGCTGGTCCGGAAAAATTCCTTCTCGCTCCTGAATCTTTTGC 199549 ||||| ||||| | ||||||||| ||||| ||| || || ||||| |||||| | Sbjct 424717 CCGGCAAAGATCAAACGCTGCTGATCCGGCGGAATGCCCTCCTTGTCCTGGATCTTTGCC 424776 Query 199550 TTCACGGATTCGACGGTGTCTGTTGTTTCTACATCCAACGTGATCGTCTTACCCGTGAGA 199609 |||||| |||| |||||| | | || || |||| ||||| ||||| || ||||| Sbjct 424777 TTCACGTTCTCGATGGTGTCGCTGGCCTCAACCTCCAGAGTGATGGTCTTTCCGGTGAGC 424836 Query 199610 GTTTTCACAAAAATTTG 199626 || || ||||||||||| Sbjct 424837 GTCTTGACAAAAATTTG 424853 >seq4 Length=1352950 Score = 95.1 bits (104), Expect = 3e-14 Identities = 103/137 (75%), Gaps = 0/137 (0%) Strand=Plus/Plus Query 199490 CCGGCGAAGATGAGACGCTGCTGGTCCGGAAAAATTCCTTCTCGCTCCTGAATCTTTTGC 199549 ||||| ||||| |||||||||||||| || ||| || || ||||| ||||| | Sbjct 415637 CCGGCAAAGATCAGACGCTGCTGGTCAGGCGGAATGCCCTCCTTGTCCTGGATCTTGGCC 415696 Query 199550 TTCACGGATTCGACGGTGTCTGTTGTTTCTACATCCAACGTGATCGTCTTACCCGTGAGA 199609 |||||| |||| |||||| | | || || ||||| ||||| ||||| || |||||| Sbjct 415697 TTCACGTTCTCGATGGTGTCGCTGGCCTCGACCTCCAAAGTGATGGTCTTGCCGGTGAGA 415756 Query 199610 GTTTTCACAAAAATTTG 199626 || || || |||||||| Sbjct 415757 GTCTTGACGAAAATTTG 415773 Score = 95.1 bits (104), Expect = 3e-14 Identities = 104/137 (76%), Gaps = 1/137 (1%) Strand=Plus/Minus Query 199490 CCGGCGAAGATGAGACGCTGCTGGTCCGGAAAAATTCCTTCTCGCTCCTGAATCTTTTGC 199549 ||||| ||||| |||||||||||||| || ||| || || ||||| ||||| | Sbjct 417520 CCGGCAAAGATCAGACGCTGCTGGTCAGGCGGAATGCCCTCCTTGTCCTGGATCTTGGCC 417461 Query 199550 TTCACGGATTCGACGGTGTCTGTTGTTTCTACATCCAACGTGATCGTCTTACCCGTGAGA 199609 |||||| |||| |||||| | || || || ||||| ||||| ||||| || |||||| Sbjct 417460 TTCACGTTCTCGATGGTGTC-GCTGCCTCGACCTCCAAAGTGATGGTCTTGCCGGTGAGA 417402 Query 199610 GTTTTCACAAAAATTTG 199626 || || || |||||||| Sbjct 417401 GTCTTGACGAAAATTTG 417385 Score = 89.7 bits (98), Expect = 1e-12 Identities = 102/137 (74%), Gaps = 0/137 (0%) Strand=Plus/Minus Query 199490 CCGGCGAAGATGAGACGCTGCTGGTCCGGAAAAATTCCTTCTCGCTCCTGAATCTTTTGC 199549 ||||| ||||| |||||||||||||| || ||| || || ||||| ||||| | Sbjct 416594 CCGGCAAAGATCAGACGCTGCTGGTCAGGCGGAATGCCCTCCTTGTCCTGGATCTTGGCC 416535 Query 199550 TTCACGGATTCGACGGTGTCTGTTGTTTCTACATCCAACGTGATCGTCTTACCCGTGAGA 199609 |||||| |||| ||| || | | || || ||||| ||||| ||||| || |||||| Sbjct 416534 TTCACGTTCTCGATGGTATCGCTGGCCTCGACCTCCAAAGTGATGGTCTTGCCGGTGAGA 416475 Query 199610 GTTTTCACAAAAATTTG 199626 || || || |||||||| Sbjct 416474 GTCTTGACGAAAATTTG 416458 Score = 89.7 bits (98), Expect = 1e-12 Identities = 102/137 (74%), Gaps = 0/137 (0%) Strand=Plus/Minus Query 199490 CCGGCGAAGATGAGACGCTGCTGGTCCGGAAAAATTCCTTCTCGCTCCTGAATCTTTTGC 199549 ||||| ||||| ||||||||||| || || ||| || || ||||| ||||| | Sbjct 417241 CCGGCAAAGATCAGACGCTGCTGATCAGGCGGAATGCCCTCCTTGTCCTGGATCTTGGCC 417182 Query 199550 TTCACGGATTCGACGGTGTCTGTTGTTTCTACATCCAACGTGATCGTCTTACCCGTGAGA 199609 |||||| |||| |||||| | | || || ||||| ||||| ||||| || |||||| Sbjct 417181 TTCACGTTCTCGATGGTGTCGCTGGCCTCGACCTCCAAAGTGATGGTCTTGCCGGTGAGA 417122 Query 199610 GTTTTCACAAAAATTTG 199626 || || || |||||||| Sbjct 417121 GTCTTGACGAAAATTTG 417105 >seq703 Length=10658 Score = 89.7 bits (98), Expect = 1e-12 Identities = 100/134 (75%), Gaps = 0/134 (0%) Strand=Plus/Plus Query 199421 ACAAGGTGGAGAGTCGACTCCTTTTGGACGTTGTAGTCAGCCAAAGTCCTTCCATCTTCC 199480 || || ||||||||||||||||| |||| ||||||||| | |||| | | ||| || Sbjct 8166 ACGAGATGGAGAGTCGACTCCTTCTGGATGTTGTAGTCGGTCAAAATATGACGATCATCA 8225 Query 199481 AGCTGCTTTCCGGCGAAGATGAGACGCTGCTGGTCCGGAAAAATTCCTTCTCGCTCCTGA 199540 ||||| |||||||||||||| | | ||||||| || | ||| || || ||||| Sbjct 8226 AGCTGTTTTCCGGCGAAGATCAAAAGCTGCTGATCAGACGGAATGCCCTCCTTGTCCTGG 8285 Query 199541 ATCTTTTGCTTCAC 199554 ||||| |||||| Sbjct 8286 ATCTTGGCCTTCAC 8299 >seq555 Length=21539 Score = 89.7 bits (98), Expect = 1e-12 Identities = 100/134 (75%), Gaps = 0/134 (0%) Strand=Plus/Plus Query 199421 ACAAGGTGGAGAGTCGACTCCTTTTGGACGTTGTAGTCAGCCAAAGTCCTTCCATCTTCC 199480 || || ||||||||||||||||| |||| ||||||||| | |||| | | ||| || Sbjct 4651 ACGAGATGGAGAGTCGACTCCTTCTGGATGTTGTAGTCGGTCAAAATATGACGATCATCA 4710 Query 199481 AGCTGCTTTCCGGCGAAGATGAGACGCTGCTGGTCCGGAAAAATTCCTTCTCGCTCCTGA 199540 ||||| |||||||||||||| | | ||||||| || | ||| || || ||||| Sbjct 4711 AGCTGTTTTCCGGCGAAGATCAAAAGCTGCTGATCAGACGGAATGCCCTCCTTGTCCTGG 4770 Query 199541 ATCTTTTGCTTCAC 199554 ||||| |||||| Sbjct 4771 ATCTTGGCCTTCAC 4784 >seq551 Length=22149 Score = 89.7 bits (98), Expect = 1e-12 Identities = 100/134 (75%), Gaps = 0/134 (0%) Strand=Plus/Minus Query 199421 ACAAGGTGGAGAGTCGACTCCTTTTGGACGTTGTAGTCAGCCAAAGTCCTTCCATCTTCC 199480 || || ||||||||||||||||| |||| ||||||||| | |||| | | ||| || Sbjct 17499 ACGAGATGGAGAGTCGACTCCTTCTGGATGTTGTAGTCGGTCAAAATATGACGATCATCA 17440 Query 199481 AGCTGCTTTCCGGCGAAGATGAGACGCTGCTGGTCCGGAAAAATTCCTTCTCGCTCCTGA 199540 ||||| |||||||||||||| | | ||||||| || | ||| || || ||||| Sbjct 17439 AGCTGTTTTCCGGCGAAGATCAAAAGCTGCTGATCAGACGGAATGCCCTCCTTGTCCTGG 17380 Query 199541 ATCTTTTGCTTCAC 199554 ||||| |||||| Sbjct 17379 ATCTTGGCCTTCAC 17366 >seq234 Length=104851 Score = 89.7 bits (98), Expect = 1e-12 Identities = 75/92 (82%), Gaps = 0/92 (0%) Strand=Plus/Minus Query 199424 AGGTGGAGAGTCGACTCCTTTTGGACGTTGTAGTCAGCCAAAGTCCTTCCATCTTCCAGC 199483 || ||||||||||||||||| |||| ||||||||| | ||||| || ||||| ||| Sbjct 49137 AGATGGAGAGTCGACTCCTTCTGGATGTTGTAGTCGGTCAAAGCGAGACCGTCTTCGAGC 49078 Query 199484 TGCTTTCCGGCGAAGATGAGACGCTGCTGGTC 199515 || |||||||||||||| | | ||||||| || Sbjct 49077 TGTTTTCCGGCGAAGATCAAAAGCTGCTGATC 49046 >seq32 Length=600051 Score = 87.8 bits (96), Expect = 4e-12 Identities = 132/188 (70%), Gaps = 0/188 (0%) Strand=Plus/Plus Query 199439 TCCTTTTGGACGTTGTAGTCAGCCAAAGTCCTTCCATCTTCCAGCTGCTTTCCGGCGAAG 199498 |||||||| | |||||||||||||||||| | |||| || ||||| || || || ||| Sbjct 414379 TCCTTTTGAATGTTGTAGTCAGCCAAAGTGCCATCATCATCGAGCTGTTTGCCCGCAAAG 414438 Query 199499 ATGAGACGCTGCTGGTCCGGAAAAATTCCTTCTCGCTCCTGAATCTTTTGCTTCACGGAT 199558 || || || ||||| | | || ||||| |||| | || || ||||| Sbjct 414439 ATCAGTCGTTGCTGTTTAGTTGGGATGCCTTCCATGGCCTGGACTTTCTGTTTCACATTG 414498 Query 199559 TCGACGGTGTCTGTTGTTTCTACATCCAACGTGATCGTCTTACCCGTGAGAGTTTTCACA 199618 | || |||||| | | | || |||| ||| || | || ||||| | |||||||||| Sbjct 414499 TTGATGGTGTCCGAGCTGTGCACCTCCAGCGTCATGGCTTTTCCCGTCAAAGTTTTCACA 414558 Query 199619 AAAATTTG 199626 |||||||| Sbjct 414559 AAAATTTG 414566 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1178887674320482