Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Globodera_20ellingtonae_20[genbank_20GCA_5F001723225.1_202016-09-12] 2,246 sequences; 105,964,814 total letters Query= NC_013772.1 Length=176677 Score E Sequences producing significant alignments: (Bits) Value seq36 91.5 2e-13 seq4 87.8 2e-12 >seq36 Length=625759 Score = 91.5 bits (100), Expect = 2e-13 Identities = 104/140 (74%), Gaps = 0/140 (0%) Strand=Plus/Plus Query 46454 CCGGCGAATATCAAGCGCTGCTGGTCGGCCGGCACGCTCTCCTTGTCCATGATCTTCTTC 46513 ||||| || |||||||||||||| || | ||| | || |||||||||| |||||| | Sbjct 425263 CCGGCAAAGATCAAGCGCTGCTGATCCGGCGGAATGCCCTCCTTGTCCTGGATCTTTGCC 425322 Query 46514 TTGAGCGTCGCCACCGTGTCGCTCGATTCCACATCCACCGTGATGGTTTTGCCCGTCAGC 46573 || | || | | |||||||| | || || |||| |||||||| ||||| || ||| Sbjct 425323 TTCACATTCTCGATGGTGTCGCTGGCCTCAACCTCCAGAGTGATGGTCTTGCCGGTAAGC 425382 Query 46574 GTTTTAACAAAGATTTGCAT 46593 || || || || || ||||| Sbjct 425383 GTCTTCACGAAAATCTGCAT 425402 >seq4 Length=1352950 Score = 87.8 bits (96), Expect = 2e-12 Identities = 104/141 (74%), Gaps = 0/141 (0%) Strand=Plus/Minus Query 46454 CCGGCGAATATCAAGCGCTGCTGGTCGGCCGGCACGCTCTCCTTGTCCATGATCTTCTTC 46513 ||||| || |||| ||||||||||| | ||| | || |||||||||| |||||| | Sbjct 417800 CCGGCAAAGATCAGACGCTGCTGGTCAGGCGGAATGCCCTCCTTGTCCTGGATCTTGGCC 417741 Query 46514 TTGAGCGTCGCCACCGTGTCGCTCGATTCCACATCCACCGTGATGGTTTTGCCCGTCAGC 46573 || | || | | |||||||| | || || || | |||||||| ||||| || ||| Sbjct 417740 TTCACGTTCTCGATGGTGTCGCTGGCCTCGACCTCGAGAGTGATGGTCTTGCCGGTGAGC 417681 Query 46574 GTTTTAACAAAGATTTGCATT 46594 || || || || ||||||||| Sbjct 417680 GTCTTGACGAAAATTTGCATT 417660 Score = 86.0 bits (94), Expect = 7e-12 Identities = 103/140 (74%), Gaps = 0/140 (0%) Strand=Plus/Plus Query 46454 CCGGCGAATATCAAGCGCTGCTGGTCGGCCGGCACGCTCTCCTTGTCCATGATCTTCTTC 46513 ||||| || |||| ||||||||||| | ||| | || |||||||||| |||||| | Sbjct 415637 CCGGCAAAGATCAGACGCTGCTGGTCAGGCGGAATGCCCTCCTTGTCCTGGATCTTGGCC 415696 Query 46514 TTGAGCGTCGCCACCGTGTCGCTCGATTCCACATCCACCGTGATGGTTTTGCCCGTCAGC 46573 || | || | | |||||||| | || || |||| |||||||| ||||| || || Sbjct 415697 TTCACGTTCTCGATGGTGTCGCTGGCCTCGACCTCCAAAGTGATGGTCTTGCCGGTGAGA 415756 Query 46574 GTTTTAACAAAGATTTGCAT 46593 || || || || |||||||| Sbjct 415757 GTCTTGACGAAAATTTGCAT 415776 Score = 84.2 bits (92), Expect = 2e-11 Identities = 104/141 (74%), Gaps = 1/141 (1%) Strand=Plus/Minus Query 46454 CCGGCGAATATCAAGCGCTGCTGGTCGGCCGGCACGCTCTCCTTGTCCATGATCTTCTTC 46513 ||||| || |||| ||||||||||| | ||| | || |||||||||| |||||| | Sbjct 417520 CCGGCAAAGATCAGACGCTGCTGGTCAGGCGGAATGCCCTCCTTGTCCTGGATCTTGGCC 417461 Query 46514 TTGAGCGTCGCCACCGTGTCGCTCGATTCCACATCCACCGTGATGGTTTTGCCCGTCAGC 46573 || | || | | |||||||| | || || |||| |||||||| ||||| || || Sbjct 417460 TTCACGTTCTCGATGGTGTCGCT-GCCTCGACCTCCAAAGTGATGGTCTTGCCGGTGAGA 417402 Query 46574 GTTTTAACAAAGATTTGCATT 46594 || || || || ||||||||| Sbjct 417401 GTCTTGACGAAAATTTGCATT 417381 Score = 82.4 bits (90), Expect = 9e-11 Identities = 102/140 (73%), Gaps = 0/140 (0%) Strand=Plus/Minus Query 46454 CCGGCGAATATCAAGCGCTGCTGGTCGGCCGGCACGCTCTCCTTGTCCATGATCTTCTTC 46513 ||||| || |||| ||||||||||| | ||| | || |||||||||| |||||| | Sbjct 416594 CCGGCAAAGATCAGACGCTGCTGGTCAGGCGGAATGCCCTCCTTGTCCTGGATCTTGGCC 416535 Query 46514 TTGAGCGTCGCCACCGTGTCGCTCGATTCCACATCCACCGTGATGGTTTTGCCCGTCAGC 46573 || | || | | || ||||| | || || |||| |||||||| ||||| || || Sbjct 416534 TTCACGTTCTCGATGGTATCGCTGGCCTCGACCTCCAAAGTGATGGTCTTGCCGGTGAGA 416475 Query 46574 GTTTTAACAAAGATTTGCAT 46593 || || || || |||||||| Sbjct 416474 GTCTTGACGAAAATTTGCAT 416455 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 565222530931920