Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Globodera_20ellingtonae_20[genbank_20GCA_5F001723225.1_202016-09-12] 2,246 sequences; 105,964,814 total letters Query= NC_013953.1 Length=156344 Score E Sequences producing significant alignments: (Bits) Value seq62 107 2e-18 seq9 107 2e-18 seq202 100 3e-16 >seq62 Length=411361 Score = 107 bits (118), Expect = 2e-18 Identities = 166/231 (72%), Gaps = 6/231 (3%) Strand=Plus/Minus Query 38244 aTGCAAATATTCGTAAAAACGCTCACGGGCAAAACCATCACCGTCGACGTCGAGGCCACC 38303 |||||||| ||||| || || || || |||||||| ||||| | ||||| ||| | Sbjct 311507 ATGCAAATTTTCGTGAAGACACTGACCGGCAAAACGATCACTTTGGACGTGGAGAGTTCG 311448 Query 38304 GACAGCGTGCA-AACGCTTAAAGAAAAA-ATCCTCGACAAAGAGGGAATTCCCGCC-GAC 38360 |||| || | |||| | |||| || |||| ||||| ||||| || |||||| || Sbjct 311447 GACACAGTTGACAACG--TGAAGACGAAGATCCAGGACAAGGAGGGCAT-CCCGCCTGAT 311391 Query 38361 CAACAGCGGCTCATTTACGCGGGCAAACAGCTGGACGACGAGCGCACCCTCAACGACTAC 38420 || || ||||| || | || ||||||||||| || || | ||||| | ||||||| Sbjct 311390 CAGCAACGGCTGATCTTTGCCGGCAAACAGCTCGAAGATGGCCGCACGTTGGCCGACTAC 311331 Query 38421 AACATCCAAAAGGAAGCGACGCTGCATTTGGTGCTGCGTTTGAGAGGCGGC 38471 ||||| || ||||| | || || || ||||| || || | || |||||| Sbjct 311330 AACATTCAGAAGGAGTCTACTCTTCACTTGGTCCTTCGCCTCAGGGGCGGC 311280 >seq9 Length=1094565 Score = 107 bits (118), Expect = 2e-18 Identities = 166/231 (72%), Gaps = 6/231 (3%) Strand=Plus/Minus Query 38244 aTGCAAATATTCGTAAAAACGCTCACGGGCAAAACCATCACCGTCGACGTCGAGGCCACC 38303 |||||||| ||||| || || || || |||||||| ||||| | ||||| ||| | Sbjct 204598 ATGCAAATTTTCGTGAAGACACTGACCGGCAAAACGATCACTTTGGACGTGGAGAGTTCG 204539 Query 38304 GACAGCGTGCA-AACGCTTAAAGAAAAA-ATCCTCGACAAAGAGGGAATTCCCGCC-GAC 38360 |||| || | |||| | |||| || |||| ||||| ||||| || |||||| || Sbjct 204538 GACACAGTTGACAACG--TGAAGACGAAGATCCAGGACAAGGAGGGCAT-CCCGCCTGAT 204482 Query 38361 CAACAGCGGCTCATTTACGCGGGCAAACAGCTGGACGACGAGCGCACCCTCAACGACTAC 38420 || || ||||| || | || ||||||||||| || || | ||||| | ||||||| Sbjct 204481 CAGCAACGGCTGATCTTTGCCGGCAAACAGCTCGAAGATGGCCGCACGTTGGCCGACTAC 204422 Query 38421 AACATCCAAAAGGAAGCGACGCTGCATTTGGTGCTGCGTTTGAGAGGCGGC 38471 ||||| || ||||| | || || || ||||| || || | || |||||| Sbjct 204421 AACATTCAGAAGGAGTCTACTCTTCACTTGGTCCTTCGCCTCAGGGGCGGC 204371 >seq202 Length=131032 Score = 100 bits (110), Expect = 3e-16 Identities = 146/202 (72%), Gaps = 7/202 (3%) Strand=Plus/Minus Query 38238 aaaaaaaTG---CAAATATTCGTAAAAACGCTCACGGGCAAAACCATCACCGTCGACGTC 38294 |||| |||| || ||||||||||| || |||| || || |||||||| | | || Sbjct 51613 AAAATAATGACACAGATATTCGTAAAGACTTTCACCGGGAAGACCATCACTCTGAAGGTT 51554 Query 38295 GAGGCCACCGACAGCGT-GCAAACGCTTAAAGAA-AAAATCCTCGACAAAGAGGGAATTC 38352 ||| ||| | || | || |||| | |||| ||||||| ||||||||||| |||| Sbjct 51553 GAGACCAGTGGCACTATCGCGAACG--TGAAGACCAAAATCCATGACAAAGAGGGGATTC 51496 Query 38353 CCGCCGACCAACAGCGGCTCATTTACGCGGGCAAACAGCTGGACGACGAGCGCACCCTCA 38412 | || ||||| || || || | ||||| |||||| |||||||| | ||| | | Sbjct 51495 GGCCGGAGCAACAACGACTGATATTTGCGGGGAAACAGTTGGACGACATGTGCAGCGTGG 51436 Query 38413 ACGACTACAACATCCAAAAGGA 38434 |||||||||||| |||||||| Sbjct 51435 CCGACTACAACATTCAAAAGGA 51414 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 500158757648640