Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Globodera_20ellingtonae_20[genbank_20GCA_5F001723225.1_202016-09-12] 2,246 sequences; 105,964,814 total letters Query= NC_014765.1 Length=198519 Score E Sequences producing significant alignments: (Bits) Value seq21 140 4e-28 seq1625 122 1e-22 seq26 120 4e-22 >seq21 Length=750507 Score = 140 bits (154), Expect = 4e-28 Identities = 213/301 (71%), Gaps = 2/301 (1%) Strand=Plus/Plus Query 7457 TCGAAATCTTCACCACCCAAG-TGTGTATCCCCCGCGGTCGCTTTGACTTCAAAGATACC 7515 ||||| || || || |||||| || || || || ||||| | || ||||||||||| || Sbjct 219827 TCGAAGTCCTCTCC-CCCAAGATGAGTGTCACCAGCGGTTGACTTCACTTCAAAGATGCC 219885 Query 7516 TCCTTCAATGTTTAACAACGAAACATCAAACGTACCACCACCCAGGTCAAAAATGAGTAC 7575 ||||||| | | | ||| ||||| ||||| || || ||||| || || ||||| || Sbjct 219886 GTCTTCAATAGTCAGAATCGACACATCTAACGTGCCGCCGCCCAGATCGAAGATGAGCAC 219945 Query 7576 GTTCGTATCGTCGTCTTTGTTCTTATCGAGACCGTACGCGATAGCCGCCGCCGTTGGTTC 7635 || ||||| | | ||||| || || ||||| ||||| ||||| |||| || || Sbjct 219946 GTGACGCTCGTCCTGTCCCTTCTTGTCAAGGCCGTAAGCGATGGCCGCGGCCGACGGCTC 220005 Query 7636 ATTAATAATACGAAGACAGTTCAGGCCAGCAATAGTTGCCGCATCTTTCGTCGCTTGTCG 7695 || || || || || |||||| || || || || | || || || || ||||| || Sbjct 220006 GTTGATGATGCGCAGCACGTTCAGACCGGCGATTGTCCCAGCGTCCTTGGTGGCTTGGCG 220065 Query 7696 TTGCGAATCGTTAAAGTAGGCCGGGACCGTTACGACCGCGTCCGTGACTTTCTTACCGAG 7755 || | | ||| ||||| |||||||| || || || |||||| | || ||| || || Sbjct 220066 CTGAAAGTAGTTGAAGTAAGCCGGGACAGTGACCACGGCGTCCTTCACAGTCTGGCCAAG 220125 Query 7756 A 7756 | Sbjct 220126 A 220126 >seq1625 Length=2074 Score = 122 bits (134), Expect = 1e-22 Identities = 209/301 (69%), Gaps = 2/301 (1%) Strand=Plus/Minus Query 7457 TCGAAATCTTCACCACCCAAG-TGTGTATCCCCCGCGGTCGCTTTGACTTCAAAGATACC 7515 |||||||| || || |||||| || || || || ||||| | || ||||||||||| || Sbjct 321 TCGAAATCCTCTCC-CCCAAGATGAGTGTCACCAGCGGTTGACTTCACTTCAAAGATGCC 263 Query 7516 TCCTTCAATGTTTAACAACGAAACATCAAACGTACCACCACCCAGGTCAAAAATGAGTAC 7575 ||||||| | | | ||| ||||| ||||| || || ||||| || || ||||| || Sbjct 262 GTCTTCAATAGTCAGAATCGACACATCGAACGTGCCGCCGCCCAGATCGAAGATGAGCAC 203 Query 7576 GTTCGTATCGTCGTCTTTGTTCTTATCGAGACCGTACGCGATAGCCGCCGCCGTTGGTTC 7635 | ||| | | | ||||| || || |||| ||||| ||||| |||| || || Sbjct 202 ATGACGCTCGCCCTGTCCCTTCTTGTCAAGGTCGTAAGCGATGGCCGCGGCCGACGGCTC 143 Query 7636 ATTAATAATACGAAGACAGTTCAGGCCAGCAATAGTTGCCGCATCTTTCGTCGCTTGTCG 7695 || || | || || |||||| || || || || | || || | || ||||| || Sbjct 142 GTTGATGACGCGCAGCACGTTCAGACCGGCGATTGTCCCAGCGTCCCTGGTGGCTTGGCG 83 Query 7696 TTGCGAATCGTTAAAGTAGGCCGGGACCGTTACGACCGCGTCCGTGACTTTCTTACCGAG 7755 || | | ||| ||||| |||||||| || || || |||||| | || ||| || || Sbjct 82 CTGAAAGTAGTTGAAGTAAGCCGGGACAGTGACCACGGCGTCCTTCACAGTCTGGCCAAG 23 Query 7756 A 7756 | Sbjct 22 A 22 >seq26 Length=597700 Score = 120 bits (132), Expect = 4e-22 Identities = 241/356 (68%), Gaps = 6/356 (2%) Strand=Plus/Minus Query 7457 TCGAAATCTTCACCACCCAAGTGTGTATCCCCCGCGGTCGCTTTGACTTCAAAGATACCT 7516 ||||| || | || || | ||| || || || ||||| | || || | ||||| | Sbjct 214073 TCGAAGTCCACGCCCCCGAGGTGAGTGTCACCGGCGGTTGACTTCACGTTGAAGATGCTG 214014 Query 7517 CCTTCAATGTTTAACAACGAAACATCAAACGTACCACCACCCAGGTCAAAAATGAGTACG 7576 ||||| | | | ||| ||||| ||||| || || ||||| || || || || ||| Sbjct 214013 TTCTCAATAGTCAGAATCGACACATCGAACGTGCCGCCGCCCAGATCGAAGATAAGCACG 213954 Query 7577 TTCGTATCGTCGTCTTTGTTCTTATCGAGACCGTACGCGATAGCCGCCGCCGTTGGTTCA 7636 | ||| | | | ||||| || || ||||| ||||| ||||| ||||| || || Sbjct 213953 TGACGCTCGCCCTGTCCCTTCTTGTCAAGGCCGTAAGCGATGGCCGCGGCCGTCGGCTCG 213894 Query 7637 TTAATAATACGAAGACAGTTCAGGCCAGCAATAGTTGCCGCATCTTTCGTCGCTTGTCGT 7696 || || || || || |||||| || || || | | || || || | ||||| || Sbjct 213893 TTGATGATGCGCAGCACGTTCAGACCGGCGATTGACCCAGCGTCCTTGGCGGCTTGGCGC 213834 Query 7697 TGCGAATCGTTAAAGTAGGCCGGGACCGTTAC---GACC---GCGTCCGTGACTTTCTTA 7750 || || | ||| ||||| |||||||| || || |||| |||||| | || ||| Sbjct 213833 TGAGAGTTGTTGAAGTAAGCCGGGACAGTGACCGTGACCACGGCGTCCTTCACAGTCTGG 213774 Query 7751 CCGAGATACGATTCCGCGATATCTTTCATTTTGGTAAGAACCATCGATGAAATCTC 7806 || ||| | | || || | || ||||||||||| || |||||||| ||||| || Sbjct 213773 CCAAGAAAGGCCTCGGCCGTCTCCTTCATTTTGGTCAGCACCATCGACGAAATTTC 213718 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 635114968646640