Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Globodera_20ellingtonae_20[genbank_20GCA_5F001723225.1_202016-09-12] 2,246 sequences; 105,964,814 total letters Query= NC_014789.1 Length=184409 Score E Sequences producing significant alignments: (Bits) Value seq4 86.0 7e-12 seq26 82.4 9e-11 seq7 82.4 9e-11 >seq4 Length=1352950 Score = 86.0 bits (94), Expect = 7e-12 Identities = 134/192 (70%), Gaps = 0/192 (0%) Strand=Plus/Plus Query 106459 AAGGGCGATTGATGCCAAATTGCAAACAGCCGTCTCATCCTTATCTGTGTACTCTAAAAT 106518 ||| || || || ||||| ||||| ||||| ||||||||| | || || | || Sbjct 596804 AAGCGCAATGGAGGCCAAGTTGCACACAGCGGTCTCATCCGGTGACGAATATTCAATGAT 596863 Query 106519 TTCTGTACACAAGTTGGAACTCTTAATCGTCCCCAAATTCTTTTGGTTACTCTTTTTGTT 106578 ||| || ||||| || || | || || || ||||| || | || || ||| || Sbjct 596864 TTCGGTGCACAAATTTGAGCATTTTATGGTGCCCAAGTTTTGCTGATTTGACTTCCGATT 596923 Query 106579 GCACGCATCCTTGTAGAGCATGTAGGGCGTCCCCGTCTCCGTCTGTGACTTGAGAATTGC 106638 |||||| ||||| | | |||||| ||||| || ||||||||||| || ||| || Sbjct 596924 GCACGCGTCCTTAAACAACATGTACGGCGTGCCGGTCTCCGTCTGCGAACTGATGATGCT 596983 Query 106639 CTTCCACACATC 106650 ||||||||| || Sbjct 596984 CTTCCACACTTC 596995 >seq26 Length=597700 Score = 82.4 bits (90), Expect = 9e-11 Identities = 57/65 (88%), Gaps = 0/65 (0%) Strand=Plus/Minus Query 136171 TAGTGTAGTGGTCATCACTTTGGACTTTGAATCCAACAACCCTGGTTCAAATCCAGGTAG 136230 |||||||||||| ||||| ||||||||||||||||| ||||| ||||| ||||| || || Sbjct 147815 TAGTGTAGTGGTGATCACATTGGACTTTGAATCCAATAACCCCGGTTCGAATCCGGGCAG 147756 Query 136231 GAGCT 136235 || || Sbjct 147755 GACCT 147751 >seq7 Length=1101385 Score = 82.4 bits (90), Expect = 9e-11 Identities = 60/70 (86%), Gaps = 0/70 (0%) Strand=Plus/Minus Query 136166 TCTTATAGTGTAGTGGTCATCACTTTGGACTTTGAATCCAACAACCCTGGTTCAAATCCA 136225 || ||| ||||||||| |||||| ||||||||||||||| |||||| ||||| ||||| Sbjct 952273 TCCTATGGTGTAGTGGCTATCACTCTGGACTTTGAATCCAGCAACCCCGGTTCGAATCCG 952214 Query 136226 GGTAGGAGCT 136235 ||||||| || Sbjct 952213 GGTAGGACCT 952204 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 589964236289040